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Pinned

  1. PairedEndAssemblyConda PairedEndAssemblyConda Public

    Worflow performing de novo assembly of bacterial genomes from paired-end reads

    Python 1

  2. PairedEndVariantConda PairedEndVariantConda Public

    Workflow performing variant calling analysis of bacterial genomes from paired-end reads

    Python 1

  3. BashDataManagement BashDataManagement Public

    Useful Bash commands to manage genomics data and dataframes from multiple sources

    Shell 1

  4. cgMLSTcomparison cgMLSTcomparison Public

    Script performing Principal Component Analysis (PCA) and Generalized Linear Model (GLM)

    R

  5. DownsampledReads DownsampledReads Public

    Script performing 4-way figures and linear regressions

    R

  6. TreeToCongruency TreeToCongruency Public

    Script comparing two trees through a tanglegram and estimations of congruency metrics

    R 1