Mucin gene expression analysis in PAAD. Correlation, hierarchical clustering, survival and subgroup analysis
The script was originally used in the following paper: Jonckheere N, Auwercx J, Hadj Bachir E, Coppin L, Boukrout N, Vincent A, Neve B, Gautier M, Treviño V, Van Seuningen I. Unsupervised Hierarchical Clustering of Pancreatic Adenocarcinoma Dataset from TCGA Defines a Mucin Expression Profile that Impacts Overall Survival. Cancers (Basel). 2020 Nov 9;12(11):3309. doi: 10.3390/cancers12113309. PMID: 33182511; PMCID: PMC7697168.
This script was assembled by a complete beginner (me). Everything could be optimized but it is still usefull for whoever want to quickly check a list of gene in TCGA datasets. Do not hesitate to contact me if necessary nicolas.jonckheere@inserm.fr