corrected scanner geometry in transaxial plane #319
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| name: Test | |
| on: [push, pull_request] | |
| jobs: | |
| check: | |
| if: github.event_name != 'pull_request' || !contains('OWNER,MEMBER,COLLABORATOR', github.event.pull_request.author_association) | |
| runs-on: ubuntu-latest | |
| name: Check | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| - name: set PYSHA | |
| run: echo "PYSHA=$(python -VV | sha256sum | cut -d' ' -f1)" >> $GITHUB_ENV | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pre-commit | |
| key: pre-commit|${{ env.PYSHA }}|${{ hashFiles('.pre-commit-config.yaml') }} | |
| - name: dependencies | |
| run: | | |
| pip install -U pre-commit | |
| sudo apt-get install -yqq clang-format | |
| - uses: reviewdog/action-setup@v1 | |
| - if: github.event_name == 'push' || github.event_name == 'pull_request' | |
| name: comment | |
| run: | | |
| if [[ $EVENT == pull_request ]]; then | |
| REPORTER=github-pr-review | |
| else | |
| REPORTER=github-check | |
| fi | |
| pre-commit run -a todo | reviewdog -efm="%f:%l: %m" -name=TODO -tee -reporter=$REPORTER -filter-mode nofilter | |
| pre-commit run -a flake8 | reviewdog -f=pep8 -name=flake8 -tee -reporter=$REPORTER -filter-mode nofilter | |
| env: | |
| REVIEWDOG_GITHUB_API_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| EVENT: ${{ github.event_name }} | |
| - run: pre-commit run -a --show-diff-on-failure | |
| test: | |
| if: github.event_name != 'pull_request' || !contains('OWNER,MEMBER,COLLABORATOR', github.event.pull_request.author_association) | |
| runs-on: [self-hosted, python, cuda, matlab] | |
| strategy: | |
| matrix: | |
| python: [3.7, '3.10'] | |
| name: Test py${{ matrix.python }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Run setup-python | |
| run: setup-python -p${{ matrix.python }} | |
| - run: pip install -U --no-binary nimpa -e .[dev] | |
| - run: pytest | |
| - uses: codecov/codecov-action@v1 | |
| - name: Post Run setup-python | |
| run: setup-python -p${{ matrix.python }} -Dr | |
| if: ${{ always() }} | |
| deploy: | |
| needs: [check, test] | |
| name: PyPI Deploy | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v4 | |
| - id: dist | |
| uses: casperdcl/deploy-pypi@v2 | |
| with: | |
| requirements: twine setuptools wheel setuptools_scm[toml] ninst scikit-build | |
| build: sdist | |
| gpg_key: ${{ secrets.GPG_KEY }} | |
| password: ${{ secrets.PYPI_TOKEN }} | |
| upload: ${{ github.event_name == 'push' && startsWith(github.ref, 'refs/tags') }} | |
| env: | |
| HMUDIR: ${{ github.workspace }} | |
| - id: meta | |
| name: Changelog | |
| run: | | |
| echo ::set-output name=tag::${GITHUB_REF#refs/tags/} | |
| git log --pretty='format:%d%n- %s%n%b---' $(git tag --sort=v:refname | tail -n2 | head -n1)..HEAD > _CHANGES.md | |
| - if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') | |
| uses: softprops/action-gh-release@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GH_TOKEN }} | |
| with: | |
| name: nipet ${{ steps.meta.outputs.tag }} stable | |
| body_path: _CHANGES.md | |
| draft: true | |
| files: | | |
| dist/${{ steps.dist.outputs.targz }} | |
| dist/${{ steps.dist.outputs.targz_asc }} |