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bump version, merge pull request #15 from NiftyPET/dev2
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,50 @@ | ||
| name: Comment Bot | ||
| on: | ||
| issue_comment: | ||
| types: [created] | ||
| pull_request_review_comment: | ||
| types: [created] | ||
| jobs: | ||
| tag: # /tag <tagname> <commit> | ||
| if: startsWith(github.event.comment.body, '/tag ') | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - name: React Seen | ||
| uses: actions/github-script@v2 | ||
| with: | ||
| script: | | ||
| const perm = await github.repos.getCollaboratorPermissionLevel({ | ||
| owner: context.repo.owner, repo: context.repo.repo, | ||
| username: context.payload.comment.user.login}) | ||
| post = (context.eventName == "issue_comment" | ||
| ? github.reactions.createForIssueComment | ||
| : github.reactions.createForPullRequestReviewComment) | ||
| if (!["admin", "write"].includes(perm.data.permission)){ | ||
| post({ | ||
| owner: context.repo.owner, repo: context.repo.repo, | ||
| comment_id: context.payload.comment.id, content: "laugh"}) | ||
| throw "Permission denied for user " + context.payload.comment.user.login | ||
| } | ||
| post({ | ||
| owner: context.repo.owner, repo: context.repo.repo, | ||
| comment_id: context.payload.comment.id, content: "eyes"}) | ||
| - name: Tag Commit | ||
| run: | | ||
| git clone https://${GITHUB_TOKEN}@github.com/${GITHUB_REPOSITORY} repo | ||
| git -C repo tag $(echo "$BODY" | awk '{print $2" "$3}') | ||
| git -C repo push --tags | ||
| rm -rf repo | ||
| env: | ||
| BODY: ${{ github.event.comment.body }} | ||
| GITHUB_TOKEN: ${{ secrets.GH_TOKEN }} | ||
| - name: React Success | ||
| uses: actions/github-script@v2 | ||
| with: | ||
| script: | | ||
| post = (context.eventName == "issue_comment" | ||
| ? github.reactions.createForIssueComment | ||
| : github.reactions.createForPullRequestReviewComment) | ||
| post({ | ||
| owner: context.repo.owner, repo: context.repo.repo, | ||
| comment_id: context.payload.comment.id, content: "rocket"}) |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,81 @@ | ||
| name: Test | ||
| on: | ||
| - push | ||
| jobs: | ||
| check: | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| matrix: | ||
| python: [3.6, 3.9] | ||
| name: Check py${{ matrix.python }} | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| with: | ||
| fetch-depth: 0 | ||
| - uses: actions/setup-python@v2 | ||
| with: | ||
| python-version: ${{ matrix.python }} | ||
| - name: set PYSHA | ||
| run: echo "PYSHA=$(python -VV | sha256sum | cut -d' ' -f1)" >> $GITHUB_ENV | ||
| - uses: actions/cache@v1 | ||
| with: | ||
| path: ~/.cache/pre-commit | ||
| key: pre-commit|${{ env.PYSHA }}|${{ hashFiles('.pre-commit-config.yaml') }} | ||
| - run: pip install -U pre-commit twine setuptools wheel setuptools_scm[toml] ninst scikit-build | ||
| - run: HMUDIR=$HOME python setup.py sdist | ||
| - run: twine check dist/* | ||
| - run: pre-commit run -a --show-diff-on-failure | ||
| test: | ||
| runs-on: [self-hosted, cuda] | ||
| name: Test | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| with: | ||
| fetch-depth: 0 | ||
| - run: pip install -U -e .[dev] | ||
| - run: pytest | ||
| - run: codecov | ||
| env: | ||
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | ||
| deploy: | ||
| if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags') | ||
| needs: [check, test] | ||
| name: PyPI Deploy | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| with: | ||
| fetch-depth: 0 | ||
| - uses: actions/setup-python@v2 | ||
| with: | ||
| python-version: '3.x' | ||
| - run: pip install -U twine setuptools wheel setuptools_scm[toml] ninst scikit-build | ||
| - run: HMUDIR=$HOME python setup.py sdist | ||
| - run: twine upload dist/* | ||
| env: | ||
| TWINE_USERNAME: __token__ | ||
| TWINE_PASSWORD: ${{ secrets.PYPI_TOKEN }} | ||
| skip_existing: true | ||
| - id: collect_assets | ||
| name: Collect assets | ||
| run: | | ||
| echo "::set-output name=asset_path::$(ls dist/*.tar.gz)" | ||
| echo "::set-output name=asset_name::$(basename dist/*.tar.gz)" | ||
| git log --pretty='format:%d%n- %s%n%b---' $(git tag --sort=v:refname | tail -n2 | head -n1)..HEAD > _CHANGES.md | ||
| - id: create_release | ||
| uses: actions/create-release@v1 | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GH_TOKEN }} | ||
| with: | ||
| tag_name: ${{ github.ref }} | ||
| release_name: ninst ${{ github.ref }} beta | ||
| body_path: _CHANGES.md | ||
| draft: true | ||
| - uses: actions/upload-release-asset@v1 | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GH_TOKEN }} | ||
| with: | ||
| upload_url: ${{ steps.create_release.outputs.upload_url }} | ||
| asset_path: ${{ steps.collect_assets.outputs.asset_path }} | ||
| asset_name: ${{ steps.collect_assets.outputs.asset_name }} | ||
| asset_content_type: application/gzip |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,16 +1,17 @@ | ||
| *.py[co] | ||
| __pycache__/ | ||
|
|
||
| # build | ||
| MANIFEST | ||
| *.so | ||
| *.png | ||
| *.eps | ||
| *.log | ||
| /docs/ | ||
| /niftypet/nipet/cmake/ | ||
| /niftypet/nipet/_dist_ver.py | ||
| /build/ | ||
| /dist/ | ||
| /nipet.egg*/ | ||
| /output/ | ||
| /niftyout/ | ||
| .ipynb_checkpoints/ | ||
| Makefile | ||
| .DS_Store | ||
| .gitignore | ||
| /_skbuild/ | ||
| /_cmake_test_compile/ | ||
| /*.egg*/ | ||
| /.eggs/ | ||
|
|
||
| /.coverage | ||
| /coverage.xml |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,19 @@ | ||
| default_language_version: | ||
| python: python3 | ||
| repos: | ||
| - repo: https://github.com/pre-commit/pre-commit-hooks | ||
| rev: v3.3.0 | ||
| hooks: | ||
| - id: check-added-large-files | ||
| - id: check-case-conflict | ||
| - id: check-docstring-first | ||
| - id: check-executables-have-shebangs | ||
| - id: check-toml | ||
| - id: check-yaml | ||
| - id: end-of-file-fixer | ||
| - id: mixed-line-ending | ||
| - id: trailing-whitespace | ||
| - hooks: | ||
| - id: isort | ||
| repo: https://github.com/timothycrosley/isort | ||
| rev: 5.6.4 |
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