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pjmark committed Dec 6, 2021
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20 changes: 20 additions & 0 deletions docs/acr_data.rst
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.. _acr_data-section:

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Raw ACR Phantom PET data
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The PET data of two 30 minute acquisitions of the American College of Radiology (ACR) Jaszczak Deluxe Flangeless ECT phantom (with a modified faceplate for PET) were acquired at the `King's College London & Guy's and St Thomas' PET Centre <http://www.sthpetcentre.org.uk/>`_. The raw list PET data, including synthetic and MR-based (UTE) |mu|-maps, as well as templates for generating sampling volumes of interest, phantom structural and PET NAC registration templates are freely available at **Zenodo** repository (click the DOI link to download the data) :cite:`Markiewicz2021b`:

.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.5760092.svg
:target: https://doi.org/10.5281/zenodo.5760092


Citing the data
---------------

When using this data set for research or publications, please cite the following: :cite:`Markiewicz2021b`:

* Markiewicz, P. J.; Krokos, G; MacKewn J; Hammers A (2021, Dec 6). ACR PET phantom raw data and templates for advanced analysis. London: Zenodo. https://doi.org/10.5281/zenodo.5760092

.. |mu| unicode:: 0x03BC
8 changes: 8 additions & 0 deletions docs/citing.rst
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===============
Citing NiftyPET
===============

When using *NiftyPET*, please cite this article:

Markiewicz, P. J., Ehrhardt, M. J., Erlandsson, K., Noonan, P. J., Barnes, A., Schott, J. M., … Ourselin, S. (2018). NiftyPET: a High-throughput Software Platform for High Quantitative Accuracy and Precision PET Imaging and Analysis. Neuroinformatics, 16(1), 95–115. https://doi.org/10.1007/s12021-017-9352-y
22 changes: 22 additions & 0 deletions docs/science.rst
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.. _science-section:

=================
Scientific Output
=================

Scientific aspects of NiftyPET
------------------------------

The core routines are written in CUDA C and embedded in Python C extensions to enable user-friendly and high-throughput executions on NVIDIA graphics processing units (GPU). The scientific aspects of this software platform are covered in two open-access publications:

* *NiftyPET: a High-throughput Software Platform for High Quantitative Accuracy and Precision PET Imaging and Analysis* Neuroinformatics (2018) 16:95. https://doi.org/10.1007/s12021-017-9352-y

* *Rapid processing of PET list-mode data for efficient uncertainty estimation and data analysis* Physics in Medicine & Biology (2016). https://doi.org/10.1088/0031-9155/61/13/N322


Applications
------------

* An example application of *NiftyPET* in the development of novel image reconstruction:

* Markiewicz, P. J., Ehrhardt, M. J., Erlandsson, K., Noonan, P. J., Barnes, A., Schott, J. M., … Ourselin, S. (2018). NiftyPET: a High-throughput Software Platform for High Quantitative Accuracy and Precision PET Imaging and Analysis. Neuroinformatics, 16(1), 95–115. https://doi.org/10.1007/s12021-017-9352-y

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