{2023.06}[foss/2022b] R v4.2.2 #328

trz42 · 2024-04-15T08:25:06Z

Sync NESSI with EESSI (PR 452).

SPDX license identifier: GPL-2.0-or-later

Missing packages:

20 out of 140 required modules missing:

* libxslt/1.1.37-GCCcore-12.2.0 (libxslt-1.1.37-GCCcore-12.2.0.eb)
* nettle/3.8.1-GCCcore-12.2.0 (nettle-3.8.1-GCCcore-12.2.0.eb)
* Xvfb/21.1.6-GCCcore-12.2.0 (Xvfb-21.1.6-GCCcore-12.2.0.eb)
* Tk/8.6.12-GCCcore-12.2.0 (Tk-8.6.12-GCCcore-12.2.0.eb)
* NLopt/2.7.1-GCCcore-12.2.0 (NLopt-2.7.1-GCCcore-12.2.0.eb)
* libogg/1.3.5-GCCcore-12.2.0 (libogg-1.3.5-GCCcore-12.2.0.eb)
* FLAC/1.4.2-GCCcore-12.2.0 (FLAC-1.4.2-GCCcore-12.2.0.eb)
* libvorbis/1.3.7-GCCcore-12.2.0 (libvorbis-1.3.7-GCCcore-12.2.0.eb)
* UDUNITS/2.2.28-GCCcore-12.2.0 (UDUNITS-2.2.28-GCCcore-12.2.0.eb)
* libopus/1.3.1-GCCcore-12.2.0 (libopus-1.3.1-GCCcore-12.2.0.eb)
* GSL/2.7-GCC-12.2.0 (GSL-2.7-GCC-12.2.0.eb)
* LAME/3.100-GCCcore-12.2.0 (LAME-3.100-GCCcore-12.2.0.eb)
* libsndfile/1.2.0-GCCcore-12.2.0 (libsndfile-1.2.0-GCCcore-12.2.0.eb)
* GLPK/5.0-GCCcore-12.2.0 (GLPK-5.0-GCCcore-12.2.0.eb)
* MPFR/4.2.0-GCCcore-12.2.0 (MPFR-4.2.0-GCCcore-12.2.0.eb)
* libgit2/1.5.0-GCCcore-12.2.0 (libgit2-1.5.0-GCCcore-12.2.0.eb)
* jq/1.6-GCCcore-12.2.0 (jq-1.6-GCCcore-12.2.0.eb)
* Abseil/20230125.2-GCCcore-12.2.0 (Abseil-20230125.2-GCCcore-12.2.0.eb)
* protobuf/23.0-GCCcore-12.2.0 (protobuf-23.0-GCCcore-12.2.0.eb)
* R/4.2.2-foss-2022b (R-4.2.2-foss-2022b.eb)

nessi-bot · 2024-04-15T08:25:10Z

Instance AWS-MC-NESSI is configured to build:

arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-cl
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb11
arch x86_64/amd/zen2 for repo nessi-2023.06-cl
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb11
arch aarch64/generic for repo nessi-2023.06-cl
arch aarch64/generic for repo nessi-2023.06-swl-deb10
arch aarch64/generic for repo nessi-2023.06-swl-deb11

nessi-bot · 2024-04-15T08:25:10Z

Instance eX3-NESSI is configured to build:

arch x86_64/amd/zen2 for repo nessi-2023.06-cl
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb11
arch aarch64/generic for repo nessi-2023.06-cl
arch aarch64/generic for repo nessi-2023.06-swl-deb10
arch aarch64/generic for repo nessi-2023.06-swl-deb11

nessi-bot · 2024-04-15T08:25:10Z

Instance Saga-NESSI is configured to build:

arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-cl
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb11
arch x86_64/intel/broadwell for repo nessi-2023.06-cl
arch x86_64/intel/broadwell for repo nessi-2023.06-swl-deb10
arch x86_64/intel/broadwell for repo nessi-2023.06-swl-deb11
arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11

nessi-bot · 2024-04-15T08:25:10Z

Instance Fram-NESSI is configured to build:

arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11
arch x86_64/intel/broadwell for repo nessi-2023.06-cl
arch x86_64/intel/broadwell for repo nessi-2023.06-swl-deb10
arch x86_64/intel/broadwell for repo nessi-2023.06-swl-deb11

trz42 · 2024-04-15T08:25:22Z

bot: build inst:Fram-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell
bot: build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake
bot: build inst:eX3-NESSI repo:nessi-2023.06-swl-deb10 arch:aarch64/generic
bot: build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2
bot: build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic

nessi-bot · 2024-04-15T08:25:24Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:Fram-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from trz42
- expanded format: build instance:Fram-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from trz42
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3-NESSI repo:nessi-2023.06-swl-deb10 arch:aarch64/generic from trz42
- expanded format: build instance:eX3-NESSI repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from trz42
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from trz42
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
handling command build instance:Fram-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:eX3-NESSI repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic resulted in:
- submitted job 170410, for details & status see {2023.06}[foss/2022b] R v4.2.2 #328 (comment)
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-04-15T08:25:24Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command build inst:Fram-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from trz42
- expanded format: build instance:Fram-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from trz42
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3-NESSI repo:nessi-2023.06-swl-deb10 arch:aarch64/generic from trz42
- expanded format: build instance:eX3-NESSI repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from trz42
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from trz42
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
handling command build instance:Fram-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:eX3-NESSI repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- submitted job 9457, for details & status see {2023.06}[foss/2022b] R v4.2.2 #328 (comment)
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- submitted job 9458, for details & status see {2023.06}[foss/2022b] R v4.2.2 #328 (comment)

nessi-bot · 2024-04-15T08:25:24Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:Fram-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from trz42
- expanded format: build instance:Fram-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from trz42
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3-NESSI repo:nessi-2023.06-swl-deb10 arch:aarch64/generic from trz42
- expanded format: build instance:eX3-NESSI repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from trz42
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from trz42
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
handling command build instance:Fram-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- submitted job 5768904, for details & status see {2023.06}[foss/2022b] R v4.2.2 #328 (comment)
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:eX3-NESSI repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-04-15T08:25:24Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:Fram-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from trz42
- expanded format: build instance:Fram-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from trz42
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3-NESSI repo:nessi-2023.06-swl-deb10 arch:aarch64/generic from trz42
- expanded format: build instance:eX3-NESSI repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from trz42
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from trz42
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
handling command build instance:Fram-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- submitted job 11167422, for details & status see {2023.06}[foss/2022b] R v4.2.2 #328 (comment)
handling command build instance:eX3-NESSI repository:nessi-2023.06-swl-deb10 architecture:aarch64/generic resulted in:
- no jobs were submitted
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-04-15T08:25:29Z

New job on instance Fram-NESSI for architecture x86_64-intel-broadwell for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/jobs/2024.04/pr_328/5768904

date	job status	comment
Apr 15 08:25:29 UTC 2024	submitted	job id `5768904` awaits release by job manager
Apr 15 08:25:56 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 15 08:26:58 UTC 2024	running	job `5768904` is running
Apr 16 05:24:34 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-5768904.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-broadwell-1713243416.tar.gz` size: 1675 MiB (1756763282 bytes) entries: 78515 modules under 2023.06/software/linux/x86_64/intel/broadwell/modules/all `Abseil/20230125.2-GCCcore-12.2.0.lua` `FLAC/1.4.2-GCCcore-12.2.0.lua` `GLPK/5.0-GCCcore-12.2.0.lua` `GSL/2.7-GCC-12.2.0.lua` `jq/1.6-GCCcore-12.2.0.lua` `LAME/3.100-GCCcore-12.2.0.lua` `libgit2/1.5.0-GCCcore-12.2.0.lua` `libogg/1.3.5-GCCcore-12.2.0.lua` `libopus/1.3.1-GCCcore-12.2.0.lua` `libsndfile/1.2.0-GCCcore-12.2.0.lua` `libvorbis/1.3.7-GCCcore-12.2.0.lua` `libxslt/1.1.37-GCCcore-12.2.0.lua` `MPFR/4.2.0-GCCcore-12.2.0.lua` `nettle/3.8.1-GCCcore-12.2.0.lua` `NLopt/2.7.1-GCCcore-12.2.0.lua` `protobuf/23.0-GCCcore-12.2.0.lua` `R/4.2.2-foss-2022b.lua` `Tk/8.6.12-GCCcore-12.2.0.lua` `UDUNITS/2.2.28-GCCcore-12.2.0.lua` `Xvfb/21.1.6-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/intel/broadwell/software `Abseil/20230125.2-GCCcore-12.2.0` `FLAC/1.4.2-GCCcore-12.2.0` `GLPK/5.0-GCCcore-12.2.0` `GSL/2.7-GCC-12.2.0` `jq/1.6-GCCcore-12.2.0` `LAME/3.100-GCCcore-12.2.0` `libgit2/1.5.0-GCCcore-12.2.0` `libogg/1.3.5-GCCcore-12.2.0` `libopus/1.3.1-GCCcore-12.2.0` `libsndfile/1.2.0-GCCcore-12.2.0` `libvorbis/1.3.7-GCCcore-12.2.0` `libxslt/1.1.37-GCCcore-12.2.0` `MPFR/4.2.0-GCCcore-12.2.0` `nettle/3.8.1-GCCcore-12.2.0` `NLopt/2.7.1-GCCcore-12.2.0` `protobuf/23.0-GCCcore-12.2.0` `R/4.2.2-foss-2022b` `Tk/8.6.12-GCCcore-12.2.0` `UDUNITS/2.2.28-GCCcore-12.2.0` `Xvfb/21.1.6-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/intel/broadwell no other files in tarball
Apr 16 05:24:34 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 6/6 test case(s) from 6 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-5768904.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Apr 16 11:05:33 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-broadwell-1713243416.tar.gz` to S3 bucket succeeded
Apr 16 11:23:18 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1713243416.tar.gz` downloaded to Stratum-0
Apr 16 11:26:29 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/175 to approve ingest
Apr 16 12:46:50 PM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1713243416.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/175
Apr 16 01:11:40 PM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1713243416.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/intel/broadwell/`

nessi-bot · 2024-04-15T08:25:30Z

New job on instance AWS-MC-NESSI for architecture x86_64-amd-zen2 for repository nessi-2023.06-swl-deb11 in job dir /project/def-nessi/SHARED/jobs/2024.04/pr_328/9457

some checksum error for extension source timereg_2.0.5.tar.gz

date	job status	comment
Apr 15 08:25:29 UTC 2024	submitted	job id `9457` awaits release by job manager
Apr 15 08:26:13 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 15 08:30:17 UTC 2024	running	job `9457` is running
Apr 15 09:17:47 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-9457.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1713171708.tar.gz` size: 41 MiB (43320217 bytes) entries: 4204 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `Abseil/20230125.2-GCCcore-12.2.0.lua` `FLAC/1.4.2-GCCcore-12.2.0.lua` `GLPK/5.0-GCCcore-12.2.0.lua` `GSL/2.7-GCC-12.2.0.lua` `jq/1.6-GCCcore-12.2.0.lua` `LAME/3.100-GCCcore-12.2.0.lua` `libgit2/1.5.0-GCCcore-12.2.0.lua` `libogg/1.3.5-GCCcore-12.2.0.lua` `libopus/1.3.1-GCCcore-12.2.0.lua` `libsndfile/1.2.0-GCCcore-12.2.0.lua` `libvorbis/1.3.7-GCCcore-12.2.0.lua` `libxslt/1.1.37-GCCcore-12.2.0.lua` `MPFR/4.2.0-GCCcore-12.2.0.lua` `nettle/3.8.1-GCCcore-12.2.0.lua` `NLopt/2.7.1-GCCcore-12.2.0.lua` `protobuf/23.0-GCCcore-12.2.0.lua` `Tk/8.6.12-GCCcore-12.2.0.lua` `UDUNITS/2.2.28-GCCcore-12.2.0.lua` `Xvfb/21.1.6-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `Abseil/20230125.2-GCCcore-12.2.0` `FLAC/1.4.2-GCCcore-12.2.0` `GLPK/5.0-GCCcore-12.2.0` `GSL/2.7-GCC-12.2.0` `jq/1.6-GCCcore-12.2.0` `LAME/3.100-GCCcore-12.2.0` `libgit2/1.5.0-GCCcore-12.2.0` `libogg/1.3.5-GCCcore-12.2.0` `libopus/1.3.1-GCCcore-12.2.0` `libsndfile/1.2.0-GCCcore-12.2.0` `libvorbis/1.3.7-GCCcore-12.2.0` `libxslt/1.1.37-GCCcore-12.2.0` `MPFR/4.2.0-GCCcore-12.2.0` `nettle/3.8.1-GCCcore-12.2.0` `NLopt/2.7.1-GCCcore-12.2.0` `protobuf/23.0-GCCcore-12.2.0` `Tk/8.6.12-GCCcore-12.2.0` `UDUNITS/2.2.28-GCCcore-12.2.0` `Xvfb/21.1.6-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Apr 15 09:17:47 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 6/6 test case(s) from 6 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9457.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

nessi-bot · 2024-04-15T08:25:30Z

New job on instance eX3-NESSI for architecture aarch64-generic for repository nessi-2023.06-swl-deb10 in job dir /home/thomarob/pilot.nessi.no/jobs/2024.04/pr_328/170410

date	job status	comment
Apr 15 08:25:29 AM UTC 2024	submitted	job id `170410` awaits release by job manager
Apr 15 08:26:19 AM UTC 2024	released	job awaits launch by Slurm scheduler
Apr 15 08:27:22 AM UTC 2024	running	job `170410` is running
Apr 16 02:45:53 AM UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-170410.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1713233737.tar.gz` size: 1663 MiB (1744170490 bytes) entries: 78515 modules under 2023.06/software/linux/aarch64/generic/modules/all `Abseil/20230125.2-GCCcore-12.2.0.lua` `FLAC/1.4.2-GCCcore-12.2.0.lua` `GLPK/5.0-GCCcore-12.2.0.lua` `GSL/2.7-GCC-12.2.0.lua` `jq/1.6-GCCcore-12.2.0.lua` `LAME/3.100-GCCcore-12.2.0.lua` `libgit2/1.5.0-GCCcore-12.2.0.lua` `libogg/1.3.5-GCCcore-12.2.0.lua` `libopus/1.3.1-GCCcore-12.2.0.lua` `libsndfile/1.2.0-GCCcore-12.2.0.lua` `libvorbis/1.3.7-GCCcore-12.2.0.lua` `libxslt/1.1.37-GCCcore-12.2.0.lua` `MPFR/4.2.0-GCCcore-12.2.0.lua` `nettle/3.8.1-GCCcore-12.2.0.lua` `NLopt/2.7.1-GCCcore-12.2.0.lua` `protobuf/23.0-GCCcore-12.2.0.lua` `R/4.2.2-foss-2022b.lua` `Tk/8.6.12-GCCcore-12.2.0.lua` `UDUNITS/2.2.28-GCCcore-12.2.0.lua` `Xvfb/21.1.6-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/generic/software `Abseil/20230125.2-GCCcore-12.2.0` `FLAC/1.4.2-GCCcore-12.2.0` `GLPK/5.0-GCCcore-12.2.0` `GSL/2.7-GCC-12.2.0` `jq/1.6-GCCcore-12.2.0` `LAME/3.100-GCCcore-12.2.0` `libgit2/1.5.0-GCCcore-12.2.0` `libogg/1.3.5-GCCcore-12.2.0` `libopus/1.3.1-GCCcore-12.2.0` `libsndfile/1.2.0-GCCcore-12.2.0` `libvorbis/1.3.7-GCCcore-12.2.0` `libxslt/1.1.37-GCCcore-12.2.0` `MPFR/4.2.0-GCCcore-12.2.0` `nettle/3.8.1-GCCcore-12.2.0` `NLopt/2.7.1-GCCcore-12.2.0` `protobuf/23.0-GCCcore-12.2.0` `R/4.2.2-foss-2022b` `Tk/8.6.12-GCCcore-12.2.0` `UDUNITS/2.2.28-GCCcore-12.2.0` `Xvfb/21.1.6-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/generic no other files in tarball
Apr 16 02:45:53 AM UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 6/6 test case(s) from 6 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-170410.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Apr 16 11:05:21 AM UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-1713233737.tar.gz` to S3 bucket succeeded
Apr 16 11:22:47 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-aarch64-generic-1713233737.tar.gz` downloaded to Stratum-0
Apr 16 11:24:14 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/172 to approve ingest
Apr 16 12:46:42 PM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-aarch64-generic-1713233737.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/172
Apr 16 12:54:15 PM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-aarch64-generic-1713233737.tar.gz` successfully ingested at `2023.06/software/linux/aarch64/generic/`

nessi-bot · 2024-04-15T08:25:34Z

New job on instance AWS-MC-NESSI for architecture x86_64-generic for repository nessi-2023.06-swl-deb11 in job dir /project/def-nessi/SHARED/jobs/2024.04/pr_328/9458

date	job status	comment
Apr 15 08:25:33 UTC 2024	submitted	job id `9458` awaits release by job manager
Apr 15 08:26:14 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 15 08:30:18 UTC 2024	running	job `9458` is running
Apr 15 18:03:16 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9458.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1713202852.tar.gz` size: 1669 MiB (1750736944 bytes) entries: 78515 modules under 2023.06/software/linux/x86_64/generic/modules/all `Abseil/20230125.2-GCCcore-12.2.0.lua` `FLAC/1.4.2-GCCcore-12.2.0.lua` `GLPK/5.0-GCCcore-12.2.0.lua` `GSL/2.7-GCC-12.2.0.lua` `jq/1.6-GCCcore-12.2.0.lua` `LAME/3.100-GCCcore-12.2.0.lua` `libgit2/1.5.0-GCCcore-12.2.0.lua` `libogg/1.3.5-GCCcore-12.2.0.lua` `libopus/1.3.1-GCCcore-12.2.0.lua` `libsndfile/1.2.0-GCCcore-12.2.0.lua` `libvorbis/1.3.7-GCCcore-12.2.0.lua` `libxslt/1.1.37-GCCcore-12.2.0.lua` `MPFR/4.2.0-GCCcore-12.2.0.lua` `nettle/3.8.1-GCCcore-12.2.0.lua` `NLopt/2.7.1-GCCcore-12.2.0.lua` `protobuf/23.0-GCCcore-12.2.0.lua` `R/4.2.2-foss-2022b.lua` `Tk/8.6.12-GCCcore-12.2.0.lua` `UDUNITS/2.2.28-GCCcore-12.2.0.lua` `Xvfb/21.1.6-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/generic/software `Abseil/20230125.2-GCCcore-12.2.0` `FLAC/1.4.2-GCCcore-12.2.0` `GLPK/5.0-GCCcore-12.2.0` `GSL/2.7-GCC-12.2.0` `jq/1.6-GCCcore-12.2.0` `LAME/3.100-GCCcore-12.2.0` `libgit2/1.5.0-GCCcore-12.2.0` `libogg/1.3.5-GCCcore-12.2.0` `libopus/1.3.1-GCCcore-12.2.0` `libsndfile/1.2.0-GCCcore-12.2.0` `libvorbis/1.3.7-GCCcore-12.2.0` `libxslt/1.1.37-GCCcore-12.2.0` `MPFR/4.2.0-GCCcore-12.2.0` `nettle/3.8.1-GCCcore-12.2.0` `NLopt/2.7.1-GCCcore-12.2.0` `protobuf/23.0-GCCcore-12.2.0` `R/4.2.2-foss-2022b` `Tk/8.6.12-GCCcore-12.2.0` `UDUNITS/2.2.28-GCCcore-12.2.0` `Xvfb/21.1.6-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/generic no other files in tarball
Apr 15 18:03:16 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 6/6 test case(s) from 6 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9458.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Apr 16 11:05:24 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-1713202852.tar.gz` to S3 bucket succeeded
Apr 16 11:23:07 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-x86_64-generic-1713202852.tar.gz` downloaded to Stratum-0
Apr 16 11:25:43 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/174 to approve ingest
Apr 16 12:46:47 PM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-generic-1713202852.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/174
Apr 16 01:06:47 PM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-generic-1713202852.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/generic/`

nessi-bot · 2024-04-15T08:25:44Z

New job on instance Saga-NESSI for architecture x86_64-intel-skylake_avx512 for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/jobs/2024.04/pr_328/11167422

date	job status	comment
Apr 15 08:25:43 AM UTC 2024	submitted	job id `11167422` awaits release by job manager
Apr 15 08:26:23 AM UTC 2024	released	job awaits launch by Slurm scheduler
Apr 15 08:27:25 AM UTC 2024	running	job `11167422` is running
Apr 16 12:14:09 AM UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-11167422.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1713224870.tar.gz` size: 1676 MiB (1757456310 bytes) entries: 78517 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `Abseil/20230125.2-GCCcore-12.2.0.lua` `FLAC/1.4.2-GCCcore-12.2.0.lua` `GLPK/5.0-GCCcore-12.2.0.lua` `GSL/2.7-GCC-12.2.0.lua` `jq/1.6-GCCcore-12.2.0.lua` `LAME/3.100-GCCcore-12.2.0.lua` `libgit2/1.5.0-GCCcore-12.2.0.lua` `libogg/1.3.5-GCCcore-12.2.0.lua` `libopus/1.3.1-GCCcore-12.2.0.lua` `libsndfile/1.2.0-GCCcore-12.2.0.lua` `libvorbis/1.3.7-GCCcore-12.2.0.lua` `libxslt/1.1.37-GCCcore-12.2.0.lua` `MPFR/4.2.0-GCCcore-12.2.0.lua` `nettle/3.8.1-GCCcore-12.2.0.lua` `NLopt/2.7.1-GCCcore-12.2.0.lua` `protobuf/23.0-GCCcore-12.2.0.lua` `R/4.2.2-foss-2022b.lua` `Tk/8.6.12-GCCcore-12.2.0.lua` `UDUNITS/2.2.28-GCCcore-12.2.0.lua` `Xvfb/21.1.6-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `Abseil/20230125.2-GCCcore-12.2.0` `FLAC/1.4.2-GCCcore-12.2.0` `GLPK/5.0-GCCcore-12.2.0` `GSL/2.7-GCC-12.2.0` `jq/1.6-GCCcore-12.2.0` `LAME/3.100-GCCcore-12.2.0` `libgit2/1.5.0-GCCcore-12.2.0` `libogg/1.3.5-GCCcore-12.2.0` `libopus/1.3.1-GCCcore-12.2.0` `libsndfile/1.2.0-GCCcore-12.2.0` `libvorbis/1.3.7-GCCcore-12.2.0` `libxslt/1.1.37-GCCcore-12.2.0` `MPFR/4.2.0-GCCcore-12.2.0` `nettle/3.8.1-GCCcore-12.2.0` `NLopt/2.7.1-GCCcore-12.2.0` `protobuf/23.0-GCCcore-12.2.0` `R/4.2.2-foss-2022b` `Tk/8.6.12-GCCcore-12.2.0` `UDUNITS/2.2.28-GCCcore-12.2.0` `Xvfb/21.1.6-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 no other files in tarball
Apr 16 12:14:09 AM UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 6/6 test case(s) from 6 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-11167422.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Apr 16 11:05:33 AM UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1713224870.tar.gz` to S3 bucket succeeded
Apr 16 11:23:28 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1713224870.tar.gz` downloaded to Stratum-0
Apr 16 11:27:15 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/176 to approve ingest
Apr 16 12:46:52 PM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1713224870.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/176
Apr 16 01:17:41 PM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1713224870.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/intel/skylake_avx512/`

trz42 · 2024-04-15T10:47:18Z

Repeat builds for zen2

bot: build inst:eX3-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2
bot: build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2

nessi-bot · 2024-04-15T10:47:22Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command build inst:eX3-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from trz42
- expanded format: build instance:eX3-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from trz42
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
handling command build instance:eX3-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted

nessi-bot · 2024-04-15T10:47:22Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:eX3-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from trz42
- expanded format: build instance:eX3-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from trz42
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2

nessi-bot · 2024-04-15T10:47:22Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:eX3-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from trz42
- expanded format: build instance:eX3-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from trz42
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
handling command build instance:eX3-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted

nessi-bot · 2024-04-15T10:47:22Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:eX3-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from trz42
- expanded format: build instance:eX3-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from trz42
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
handling command build instance:eX3-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted

nessi-bot · 2024-04-15T10:47:25Z

error: patch failed: easystacks/pilot.nessi.no/2023.06/eessi-2023.06-eb-4.9.1-2022b.yml:1 error: easystacks/pilot.nessi.no/2023.06/eessi-2023.06-eb-4.9.1-2022b.yml: patch does not apply Unable to download or merge changes between the source branch and the destination branch.Tip: This can usually be resolved by syncing your branch and resolving any merge conflicts.

nessi-bot · 2024-04-15T10:47:26Z

error: patch failed: easystacks/pilot.nessi.no/2023.06/eessi-2023.06-eb-4.9.1-2022b.yml:1 error: easystacks/pilot.nessi.no/2023.06/eessi-2023.06-eb-4.9.1-2022b.yml: patch does not apply Unable to download or merge changes between the source branch and the destination branch.Tip: This can usually be resolved by syncing your branch and resolving any merge conflicts.

…into nessi-2023.06-R-422-2022b

trz42 · 2024-04-15T10:51:27Z

Repeat builds for zen2 after fixing conflict

bot: build inst:eX3-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2
bot: build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2

nessi-bot · 2024-04-15T10:51:30Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:eX3-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from trz42
- expanded format: build instance:eX3-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from trz42
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
handling command build instance:eX3-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted

nessi-bot · 2024-04-15T10:51:30Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command build inst:eX3-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from trz42
- expanded format: build instance:eX3-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from trz42
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
handling command build instance:eX3-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- submitted job 9459, for details & status see {2023.06}[foss/2022b] R v4.2.2 #328 (comment)

nessi-bot · 2024-04-15T10:51:30Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:eX3-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from trz42
- expanded format: build instance:eX3-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from trz42
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
handling command build instance:eX3-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- submitted job 170575, for details & status see {2023.06}[foss/2022b] R v4.2.2 #328 (comment)
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted

nessi-bot · 2024-04-15T10:51:30Z

Updates by the bot instance Fram-NESSI (click for details)

received bot command build inst:eX3-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from trz42
- expanded format: build instance:eX3-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from trz42
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
handling command build instance:eX3-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted

nessi-bot · 2024-04-15T10:51:34Z

New job on instance eX3-NESSI for architecture x86_64-amd-zen2 for repository nessi-2023.06-swl-deb11 in job dir /home/thomarob/pilot.nessi.no/jobs/2024.04/pr_328/170575

date	job status	comment
Apr 15 10:51:33 AM UTC 2024	submitted	job id `170575` awaits release by job manager
Apr 15 10:52:03 AM UTC 2024	released	job awaits launch by Slurm scheduler
Apr 15 09:11:54 PM UTC 2024	finished	🤷 UNKNOWN (click triangle for details) Job results file `_bot_job170575.result` does not exist in job directory, or parsing it failed. No artefacts were found/reported.
Apr 15 09:11:54 PM UTC 2024	test result	🤷 UNKNOWN (click triangle for details) Job test file `_bot_job170575.test` does not exist in job directory, or parsing it failed.

nessi-bot · 2024-04-15T10:51:34Z

New job on instance AWS-MC-NESSI for architecture x86_64-amd-zen2 for repository nessi-2023.06-swl-deb11 in job dir /project/def-nessi/SHARED/jobs/2024.04/pr_328/9459

date	job status	comment
Apr 15 10:51:33 UTC 2024	submitted	job id `9459` awaits release by job manager
Apr 15 10:52:23 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 15 10:56:29 UTC 2024	running	job `9459` is running
Apr 15 20:51:02 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9459.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1713213163.tar.gz` size: 1673 MiB (1755194876 bytes) entries: 78515 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `Abseil/20230125.2-GCCcore-12.2.0.lua` `FLAC/1.4.2-GCCcore-12.2.0.lua` `GLPK/5.0-GCCcore-12.2.0.lua` `GSL/2.7-GCC-12.2.0.lua` `jq/1.6-GCCcore-12.2.0.lua` `LAME/3.100-GCCcore-12.2.0.lua` `libgit2/1.5.0-GCCcore-12.2.0.lua` `libogg/1.3.5-GCCcore-12.2.0.lua` `libopus/1.3.1-GCCcore-12.2.0.lua` `libsndfile/1.2.0-GCCcore-12.2.0.lua` `libvorbis/1.3.7-GCCcore-12.2.0.lua` `libxslt/1.1.37-GCCcore-12.2.0.lua` `MPFR/4.2.0-GCCcore-12.2.0.lua` `nettle/3.8.1-GCCcore-12.2.0.lua` `NLopt/2.7.1-GCCcore-12.2.0.lua` `protobuf/23.0-GCCcore-12.2.0.lua` `R/4.2.2-foss-2022b.lua` `Tk/8.6.12-GCCcore-12.2.0.lua` `UDUNITS/2.2.28-GCCcore-12.2.0.lua` `Xvfb/21.1.6-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `Abseil/20230125.2-GCCcore-12.2.0` `FLAC/1.4.2-GCCcore-12.2.0` `GLPK/5.0-GCCcore-12.2.0` `GSL/2.7-GCC-12.2.0` `jq/1.6-GCCcore-12.2.0` `LAME/3.100-GCCcore-12.2.0` `libgit2/1.5.0-GCCcore-12.2.0` `libogg/1.3.5-GCCcore-12.2.0` `libopus/1.3.1-GCCcore-12.2.0` `libsndfile/1.2.0-GCCcore-12.2.0` `libvorbis/1.3.7-GCCcore-12.2.0` `libxslt/1.1.37-GCCcore-12.2.0` `MPFR/4.2.0-GCCcore-12.2.0` `nettle/3.8.1-GCCcore-12.2.0` `NLopt/2.7.1-GCCcore-12.2.0` `protobuf/23.0-GCCcore-12.2.0` `R/4.2.2-foss-2022b` `Tk/8.6.12-GCCcore-12.2.0` `UDUNITS/2.2.28-GCCcore-12.2.0` `Xvfb/21.1.6-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Apr 15 20:51:02 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 6/6 test case(s) from 6 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9459.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Apr 16 11:06:21 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-1713213163.tar.gz` to S3 bucket succeeded
Apr 16 11:22:56 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-x86_64-amd-zen2-1713213163.tar.gz` downloaded to Stratum-0
Apr 16 11:25:00 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/173 to approve ingest
Apr 16 12:46:45 PM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-amd-zen2-1713213163.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/173
Apr 16 01:00:02 PM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-amd-zen2-1713213163.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/amd/zen2/`

trz42 · 2024-04-16T11:01:56Z

Checklist before starting deployment (setting bot:deploy label):

Check if the SPDX license identifier is provided
Check whether builds for all required architectures succeed (SUCCESS message + reasonably sized tarball)
- quite a lot of rebuilds needed, often downloads of some package failed
Check if the PR is up-to-date with the target branch nessi.no-2023.06 in the repository (if not what are the differences)
Assess if all requested changes are sound (checking files changed on GitHub.com)
Verify that all easyconfig/s being built are included with the EB version used (if not why not)
Review changes (if any) needed to get the build(s) succeed (common changes for all architectures, changes for a single architecture, changes because of build environment specifics, etc.)

trz42 · 2024-04-16T11:12:22Z

Target architectures

x86_64-intel-broadwell
x86_64-intel-skylake_avx512
x86_64-amd-zen2
x86_64-generic
aarch64-generic

Checklist for deployment/ingestion

at least one tarball for each architecture has been uploaded
at least one tarball for each architecture has been staged
for each staged tarball was a PR for approval/rejection opened
for each architecture one and only one tarball has been approved
for each architecture one and only one tarball was ingested
all tests in the CI have succeeded (rerun failed tests ~ 10 mins after last ingest)
has the package become available via CernVM-FS for all architectures ingested (for lmod cache updates pay attention to timestamp of files)

command & log

command

cd /cvmfs/pilot.nessi.no/versions/2023.06/software/linux ; \
ls -l \
      x86_64/{generic,amd/zen2,intel/[bsc]*}/{software,modules/all}/R/4.2.2-foss-2022b* \
      aarch64/generic/{software,modules/all}/R/4.2.2-foss-2022b*

log

-rw-r--r--. 1 cvmfs cvmfs 76180 Apr 16 03:59 aarch64/generic/modules/all/R/4.2.2-foss-2022b.lua
-rw-rw-r--. 1 cvmfs cvmfs 76180 Apr 15 22:24 x86_64/amd/zen2/modules/all/R/4.2.2-foss-2022b.lua
-rw-rw-r--. 1 cvmfs cvmfs 76178 Apr 15 19:30 x86_64/generic/modules/all/R/4.2.2-foss-2022b.lua
-rw-rw-r--. 1 cvmfs cvmfs 76194 Apr 16 06:34 x86_64/intel/broadwell/modules/all/R/4.2.2-foss-2022b.lua
-rw-rw-r--. 1 cvmfs cvmfs 76204 Apr 16 01:34 x86_64/intel/skylake_avx512/modules/all/R/4.2.2-foss-2022b.lua

aarch64/generic/software/R/4.2.2-foss-2022b:
total 19
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Apr 15 12:06 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 16 04:14 easybuild
dr-xr-xr-x. 4 cvmfs cvmfs 4096 Apr 15 12:06 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Apr 16 03:31 lib64 -> lib
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 15 12:06 share

x86_64/amd/zen2/software/R/4.2.2-foss-2022b:
total 19
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Apr 15 14:01 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 15 22:31 easybuild
dr-xr-xr-x. 4 cvmfs cvmfs 4096 Apr 15 14:01 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Apr 15 22:07 lib64 -> lib
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 15 14:01 share

x86_64/generic/software/R/4.2.2-foss-2022b:
total 19
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Apr 15 11:29 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 15 19:39 easybuild
dr-xr-xr-x. 4 cvmfs cvmfs 4096 Apr 15 11:29 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Apr 15 19:14 lib64 -> lib
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 15 11:29 share

x86_64/intel/broadwell/software/R/4.2.2-foss-2022b:
total 19
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Apr 15 12:10 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 16 06:55 easybuild
dr-xr-xr-x. 4 cvmfs cvmfs 4096 Apr 15 12:10 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Apr 16 05:59 lib64 -> lib
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 15 12:10 share

x86_64/intel/skylake_avx512/software/R/4.2.2-foss-2022b:
total 19
dr-xr-xr-x. 2 cvmfs cvmfs 4096 Apr 15 12:32 bin
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 16 01:46 easybuild
dr-xr-xr-x. 4 cvmfs cvmfs 4096 Apr 15 12:32 lib
lrwxrwxrwx. 1 cvmfs cvmfs    3 Apr 16 01:05 lib64 -> lib
dr-xr-xr-x. 3 cvmfs cvmfs 4096 Apr 15 12:32 share

poksumdo

Finally.

{2023.06}[foss/2022b] R v4.2.2

98ef53b

trz42 added NESSI/2023.06 sync-with-EESSI labels Apr 15, 2024

trz42 mentioned this pull request Apr 15, 2024

Syncing code-base and CVMFS repository with EESSI (April 2024) #294

Open

51 tasks

Merge branch 'nessi.no-2023.06' of github-trz:NorESSI/software-layer …

7c53b36

…into nessi-2023.06-R-422-2022b

trz42 added the bot:deploy label Apr 16, 2024

poksumdo added the ingested label Apr 16, 2024

poksumdo approved these changes Apr 16, 2024

View reviewed changes

poksumdo merged commit 909a14d into NorESSI:nessi.no-2023.06 Apr 16, 2024
25 checks passed

trz42 mentioned this pull request Apr 16, 2024

{2023.06}[foss/2023a] R-bundle-CRAN 2023.12 #290

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{2023.06}[foss/2022b] R v4.2.2 #328

{2023.06}[foss/2022b] R v4.2.2 #328

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{2023.06}[foss/2022b] R v4.2.2 #328

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