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cl.yml
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# PURL configuration for http://purl.obolibrary.org/obo/cl
idspace: CL
base_url: /obo/cl
products:
- cl.owl: https://github.com/obophenotype/cell-ontology/releases/latest/download/cl.owl
- cl.obo: https://github.com/obophenotype/cell-ontology/releases/latest/download/cl.obo
- cl-basic.owl: https://github.com/obophenotype/cell-ontology/releases/latest/download/cl-basic.owl
- cl-basic.obo: https://github.com/obophenotype/cell-ontology/releases/latest/download/cl-basic.obo
term_browser: ols
example_terms:
- CL_0000000
entries:
- exact: /dev/cl-obo.owl
replacement: http://obo.cvs.sourceforge.net/viewvc/obo/obo/ontology/anatomy/cell_type/cell.edit2.owl
- exact: /dev/cl-alanr.owl
replacement: http://obo.cvs.sourceforge.net/obo/obo/ontology/anatomy/cell_type/cl-alanr.owl
- exact: /dev/cl-jpshea.owl
replacement: http://obo.cvs.sourceforge.net/viewvc/obo/obo/ontology/anatomy/cell_type/cl-jpshea.owl
- exact: /dev/cl-alex.owl
replacement: http://obo.cvs.sourceforge.net/viewvc/obo/obo/ontology/anatomy/cell_type/cl-alex.owl
- exact: /dev/cl-plray.owl
replacement: http://obo.cvs.sourceforge.net/viewvc/obo/obo/ontology/anatomy/cell_type/cl-plray.owl
- exact: /analysis/
replacement: https://cell-ontology.googlecode.com/svn/trunk/analysis/
- exact: /tracker
replacement: https://github.com/obophenotype/cell-ontology/issues
- exact: /cl-basic.obo
replacement: https://github.com/obophenotype/cell-ontology/releases/latest/download/cl-basic.obo
- exact: /cl-basic.owl
replacement: https://github.com/obophenotype/cell-ontology/releases/latest/download/cl-basic.owl
- exact: /cl-simple.owl
replacement: https://github.com/obophenotype/cell-ontology/releases/latest/download/cl-simple.owl
- exact: /cl-simple.obo
replacement: https://github.com/obophenotype/cell-ontology/releases/latest/download/cl-simple.obo
- exact: /cl-base.owl
replacement: https://github.com/obophenotype/cell-ontology/releases/latest/download/cl-base.owl
- exact: /cl-base.obo
replacement: https://github.com/obophenotype/cell-ontology/releases/latest/download/cl-base.obo
- exact: /cl-plus.owl
replacement: https://github.com/obophenotype/cell-ontology/releases/latest/download/cl-plus.owl
- exact: /cl-plus.obo
replacement: https://github.com/obophenotype/cell-ontology/releases/latest/download/cl-plus.obo
- prefix: /analysis/cl-immgen/
replacement: https://cell-ontology.googlecode.com/svn/trunk/analysis/cl-immgen/
- prefix: /2011-12-08/
replacement: https://cell-ontology.googlecode.com/svn/releases/2011-12-08/
- prefix: /2011-12-13/
replacement: https://cell-ontology.googlecode.com/svn/releases/2011-12-13/
- prefix: /releases/201
replacement: https://raw.githubusercontent.com/obophenotype/cell-ontology/v201
tests:
- from: /releases/2015-08-08/cl.obo
to: https://raw.githubusercontent.com/obophenotype/cell-ontology/v2015-08-08/cl.obo
- prefix: /releases/2020
replacement: https://raw.githubusercontent.com/obophenotype/cell-ontology/v2020
tests:
- from: /releases/2020-01-06/cl.obo
to: https://raw.githubusercontent.com/obophenotype/cell-ontology/v2020-01-06/cl.obo
- prefix: /releases/2021
replacement: https://raw.githubusercontent.com/obophenotype/cell-ontology/v2021
tests:
- from: /releases/2021-01-22/cl.obo
to: https://raw.githubusercontent.com/obophenotype/cell-ontology/v2021-01-22/cl.obo
- prefix: /releases/2022
replacement: https://raw.githubusercontent.com/obophenotype/cell-ontology/v2022
tests:
- from: /releases/2022-01-05/cl.obo
to: https://raw.githubusercontent.com/obophenotype/cell-ontology/v2022-01-05/cl.obo
- prefix: /releases/
replacement: https://github.com/obophenotype/cell-ontology/releases/download/v
tests:
- from: /releases/2023-01-09/cl.obo
to: https://github.com/obophenotype/cell-ontology/releases/download/v2023-01-09/cl.obo
- prefix: /images/
replacement: https://raw.githubusercontent.com/obophenotype/cell-ontology/master/images/
- prefix: /tracker/
replacement: https://code.google.com/p/cell-ontology/issues/detail?id=
- prefix: /diffs/
replacement: https://cell-ontology.googlecode.com/svn/trunk/src/ontology/diffs/
- prefix: /about/
replacement: https://www.ebi.ac.uk/ols/ontologies/cl/terms?iri=http://purl.obolibrary.org/obo/
tests:
- from: /about/CL_0000000
to: https://www.ebi.ac.uk/ols/ontologies/cl/terms?iri=http://purl.obolibrary.org/obo/CL_0000000
- regex: ^/obo/cl/bds/releases/(.*)/bds\.owl$
replacement: https://raw.githubusercontent.com/obophenotype/brain_data_standards_ontologies/$1/bdscratch-full.owl
tests:
- from: /bds/releases/2021-06-29/bds.owl
to: https://raw.githubusercontent.com/obophenotype/brain_data_standards_ontologies/2021-06-29/bdscratch-full.owl
- regex: ^/obo/cl/bds/releases/(.*)/bds-(.*)\.owl$
replacement: https://raw.githubusercontent.com/obophenotype/brain_data_standards_ontologies/$1/bdscratch-$2.owl
tests:
- from: /bds/releases/Current/bds-base.owl
to: https://raw.githubusercontent.com/obophenotype/brain_data_standards_ontologies/Current/bdscratch-base.owl
- prefix: /bds/browser/
replacement: https://www.ebi.ac.uk/ols4/ontologies/pcl
- prefix: /bds/bds.owl
replacement: https://raw.githubusercontent.com/obophenotype/brain_data_standards_ontologies/Current/bdscratch-full.owl
- prefix: /bds/
replacement: https://github.com/obophenotype/brain_data_standards_ontologies/
## generic fall-through, serve direct from github by default
- prefix: /
replacement: https://github.com/obophenotype/cell-ontology/releases/latest/download/