Incorporated updated nmf estimates into modelling results. #12
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macos-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'oldrel-1'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| # JAGS GHA code from https://github.com/fawda123/EBASE | |
| - name: Install JAGS (ubuntu-latest) | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get update -y | |
| sudo apt-get install -y jags | |
| - name: Install JAGS (macOS-latest) | |
| if: runner.os == 'macOS' | |
| run : | | |
| brew install jags | |
| # Windows jags code from https://github.com/ropensci/jagstargets/actions/runs/4135319301/workflow | |
| - name: Install most Windows system dependencies | |
| if: runner.os == 'Windows' | |
| run: | | |
| pacman -Syu mingw-w64-x86_64-make --noconfirm | |
| g++ --version | |
| Get-Command g++ | Select-Object -ExpandProperty Definition | |
| mingw32-make --version | |
| Get-Command mingw32-make | Select-Object -ExpandProperty Definition | |
| (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.0.exe', 'C:\JAGS-4.3.0.exe') | |
| shell: powershell | |
| - name: Install JAGS (windows-latest) | |
| if: runner.os == 'Windows' | |
| run: C:\JAGS-4.3.0.exe /S | |
| shell: cmd | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| upload-snapshots: true |