feat: update version and hash retrieval in GitHub Actions workflow

Change the way the version and hash are obtained in the GitHub Actions workflow.

Now, the version is obtained directly from the Python package and the hash is calculated from the downloaded GitHub source code archive.

This simplifies the workflow by removing the need to upload and download the hash as an artifact.

chore: bump version number to 0.3.7

.github/workflows/publish.yml

@@ -23,14 +23,6 @@ jobs:
       run: |
         echo "tar_file=$(ls dist/*.tar.gz)" >> $GITHUB_ENV
         echo "whl_file=$(ls dist/*.whl)" >> $GITHUB_ENV
-    - name: Calculate hash
-      run: |
-        echo "$(shasum -a 256 dist/*.tar.gz | cut -d ' ' -f 1)" > hash.txt
-    - name: Upload hash as artifact
-      uses: actions/upload-artifact@v2
-      with:
-        name: hash
-        path: hash.txt
     - name: Publish to PyPI
       uses: pypa/gh-action-pypi-publish@release/v1
       with:
@@ -75,20 +67,18 @@ jobs:
         channels: olcbioinformatics,bioconda,conda-forge
     - name: Install Conda build
       run: conda install -y conda-build
-    - name: Download hash artifact
-      uses: actions/download-artifact@v2
-      with:
-        name: hash
-    - name: Read hash
-      id: read_hash
+    - name: Get version and download source code
+      run: |
+        echo "VERSION=$(python -c "from allele_tools import version; print(version.__version__)")" >> $GITHUB_ENV
+        wget https://github.com/OLC-Bioinformatics/AlleleFinder/archive/${VERSION}.tar.gz
+    - name: Calculate hash
       run: |
-        echo "HASH=$(cat hash.txt)" >> $GITHUB_ENV
+        echo "HASH=$(sha256sum AlleleFinder-${VERSION}.tar.gz | awk '{ print $1 }')" >> $GITHUB_ENV
     - name: Update meta.yaml
       run: |
-        VERSION=$(python -c "from allele_tools import version; print(version.__version__)")
         sed -i "s/{{ version }}/${VERSION}/g" recipes/meta.yaml
-        sed -i "s|{{ url }}|https://files.pythonhosted.org/packages/source/a/allelefinder/allelefinder-${VERSION}.tar.gz|g" recipes/meta.yaml
-        sed -i "s/{{ sha256 }}/${{ env.HASH }}/g" recipes/meta.yaml
+        sed -i "s|{{ url }}|https://github.com/OLC-Bioinformatics/AlleleFinder/archive/${VERSION}.tar.gz|g" recipes/meta.yaml
+        sed -i "s/{{ sha256 }}/$HASH/g" recipes/meta.yaml
     - name: Build Conda package
       run: |
         conda build .
@@ -101,7 +91,7 @@ jobs:
       run: conda install -y anaconda-client
     - name: Upload package to olcbioinformatics
       run: |
-        anaconda -t ${{ secrets.OLCBIOINFORMAT_ANACONDA_API_TOKEN }} upload -u olcbioinformatics $CONDA_BLD_PATH/noarch/allelefinder-*.tar.bz2
+        anaconda -t ${{ secrets.OLCBIOINFORMATICS_ANACONDA_API_TOKEN }} upload -u olcbioinformatics $CONDA_BLD_PATH/noarch/allelefinder-*.tar.bz2
     - name: Upload package to adamkoziol
       run: |
         anaconda -t ${{ secrets.ADAMKOZIOL_ANACONDA_API_TOKEN }} upload -u adamkoziol $CONDA_BLD_PATH/noarch/allelefinder-*.tar.bz2

allele_tools/version.py

@@ -1,4 +1,4 @@
 """
 AlleleFinder version
 """
-__version__ = '0.3.6'
+__version__ = '0.3.7'