v0.4.5

Release Notes for version 0.4.5

Fixes

• Improved gene name handling in stec.py for better readability and added additional gene name variations to the length_dict in the translate_reduce function.
• Corrected gene name handling in allele_profiler. The allele_comprehension dictionary comprehension in read_profile function now keeps the original gene names instead of modifying them. Also, adjusted the indentation in parseable_blast_outputs function.
• Adjusted gene name capitalization in methods.py to ensure compatibility between protein and gene names. This includes converting gene names to lowercase and adjusting the capitalization of protein names.

Tests

• Updated expected results in test_5_stec_allele_find.py, test_6_stec_aa_allele_find.py, and test_9_stec_allele_translate_find.py to reflect the changes made in the gene and protein naming schemes.

Chores

• Bumped version to 0.4.5 in version.py to reflect the new changes made in the gene and protein naming schemes.

Please note that these release notes are based on the commit messages and may not include all changes. For a complete list of changes, please refer to the commit history.