v0.4.5
Release Notes for version 0.4.5
Fixes
- Improved gene name handling in
stec.py
for better readability and added additional gene name variations to thelength_dict
in thetranslate_reduce
function. - Corrected gene name handling in
allele_profiler
. Theallele_comprehension
dictionary comprehension inread_profile
function now keeps the original gene names instead of modifying them. Also, adjusted the indentation inparseable_blast_outputs
function. - Adjusted gene name capitalization in
methods.py
to ensure compatibility between protein and gene names. This includes converting gene names to lowercase and adjusting the capitalization of protein names.
Tests
- Updated expected results in
test_5_stec_allele_find.py
,test_6_stec_aa_allele_find.py
, andtest_9_stec_allele_translate_find.py
to reflect the changes made in the gene and protein naming schemes.
Chores
- Bumped version to 0.4.5 in
version.py
to reflect the new changes made in the gene and protein naming schemes.
Please note that these release notes are based on the commit messages and may not include all changes. For a complete list of changes, please refer to the commit history.