binder: update dependencies, disable PDAL (#3063)

Co-authored-by: Anna Petrasova <kratochanna@gmail.com>

binder/apt.txt

@@ -1,4 +1,4 @@
-autoconf2.13
+autoconf
 autotools-dev
 bison
 flex
@@ -16,9 +16,10 @@ libgeos-dev
 libglu1-mesa-dev
 libjpeg-dev
 liblapack-dev
-liblas-c-dev
 libncurses5-dev
 libnetcdf-dev
+libpdal-dev
+libgeos-dev
 libpng-dev
 libpq-dev
 libproj-dev
@@ -31,6 +32,7 @@ make
 netcdf-bin
 p7zip
 proj-bin
+python3-pip
 sqlite3
 unixodbc-dev
 xvfb

binder/postBuild

@@ -5,18 +5,17 @@ set -e
 
 # compile
 ./configure \
-    --enable-largefile=yes \
     --with-nls \
     --with-cxx \
     --with-readline \
     --with-bzlib \
-    --with-pthread \
     --with-proj-share=/usr/share/proj \
     --with-geos=/usr/bin/geos-config \
     --with-cairo \
     --with-opengl-libs=/usr/include/GL \
     --with-freetype=yes --with-freetype-includes="/usr/include/freetype2/" \
-    --with-sqlite=yes
+    --with-sqlite=yes \
+    --without-pdal
 make
 
 # put command on path