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OSU_BMBL

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  1. deepmaps deepmaps Public

    Single-cell biological network inference using a heterogeneous graph transformer

    HTML 62 4

  2. scDEAL scDEAL Public

    Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data

    Jupyter Notebook 42 11

  3. IRIS IRIS Public

    A Shiny web server for interactive visualization and analysis of RNA-seq data

    R 22 8

  4. QUBIC2 QUBIC2 Public

    Forked from maqin2001/qubic2

    A novel biclustering algorithm for analyses of transcriptomic data.

    HTML 17 2

  5. ssread ssread Public

    A single-cell and spatial RNA-seq database for Alzheimer’s Disease

    Vue 16 6

  6. scread-protocol scread-protocol Public

    R 14 1

Repositories

Showing 10 of 45 repositories
  • Spinal-cord-scRNAseq Public

    Supplementary code for the analyses presented in the manuscript: Microglia coordinate intracellular interactions during spinal cord repair in mice

    OSU-BMBL/Spinal-cord-scRNAseq’s past year of commit activity
    HTML 0 1 0 0 Updated Jul 2, 2024
  • SpaGFT Public Forked from jxLiu-bio/SpaGFT

    Detect

    OSU-BMBL/SpaGFT’s past year of commit activity
    Jupyter Notebook 2 MIT 3 0 0 Updated Jun 29, 2024
  • BMBL-analysis-notebooks Public

    A collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in single-cell analysis.

    OSU-BMBL/BMBL-analysis-notebooks’s past year of commit activity
    HTML 7 2 0 0 Updated May 20, 2024
  • marsgt Public

    Multi-omics data analysis for rare population inference using single-cell graph transformer

    OSU-BMBL/marsgt’s past year of commit activity
    Jupyter Notebook 12 2 2 0 Updated May 18, 2024
  • ssread Public

    A single-cell and spatial RNA-seq database for Alzheimer’s Disease

    OSU-BMBL/ssread’s past year of commit activity
    Vue 16 MIT 6 0 12 Updated Apr 18, 2024
  • tesa Public
    OSU-BMBL/tesa’s past year of commit activity
    C 0 1 0 0 Updated Dec 27, 2023
  • scGNN2.0 Public
    OSU-BMBL/scGNN2.0’s past year of commit activity
    Jupyter Notebook 10 MIT 0 4 0 Updated Dec 4, 2023
  • CEMIG Public

    A new motif prediction algorithm called CEMIG (cis regulatory motif influence using de Bruijn graph)

    OSU-BMBL/CEMIG’s past year of commit activity
    C++ 0 3 0 0 Updated Nov 26, 2023
  • deepmaps Public

    Single-cell biological network inference using a heterogeneous graph transformer

    OSU-BMBL/deepmaps’s past year of commit activity
    HTML 62 4 4 1 Updated Oct 29, 2023
  • OSU-BMBL/BMBL-Tutorial-SOP’s past year of commit activity
    0 0 0 0 Updated Aug 16, 2023

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