forked from maqin2001/supercoil
-
Notifications
You must be signed in to change notification settings - Fork 1
/
makefile
39 lines (32 loc) · 1.06 KB
/
makefile
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
VER=0.1
DIST=supercoil$(VER)
PROGS=supercoil
SRCS=struct.c read_array.c get_options.c main.c expression_analysis.c valleyDetect.c dynamic_programming.c
OBJS=$(SRCS:.c=.o)
CC=gcc
LDFLAGS=-static -lm
CFLAGS=-O3 -Wall -ansi -I. -DVER=$(VER)
all: $(PROGS)
${PROGS}: $(OBJS)
$(CC) $(OBJS) -o $@ $(LDFLAGS)
.o:
$(CC) $(CFLAGS) $< -o $@
clean:
rm -f $(PROGS)
rm -f *.o
rm -f *.rules
rm -f *.chars
rm -f *.expansion
rm -f *.detail
rm -f *.valley
dist:
$(MAKE) clean
cd .. && tar czvf $(DIST).tar.gz $(DIST)/
test1:
$(MAKE)
./supercoil -i DATA/NC_000913.expr -j DATA/NC_000913.ptt -o DATA/NC_000913.gi.operon -p DATA/NC_000913.pathway -n 0.3 -g 0.5 -t 15
test2:
$(MAKE)
./supercoil -i DATA/NC_000913.expr -j DATA/NC_000913.ptt -o DATA/NC_000913.gi.operon -p DATA/NC_000913.pathway -a DATA/NC_000913.NAP -e DATA/NC_000913.HEG -D DATA/expression-value -n 0.3 -g 0.5 -t 15
test3: $(MAKE)
./supercoil -i DATA/NC_000913.expr -j DATA/NC_000913.ptt -o DATA/NC_000913.gi.operon -p DATA/NC_000913.pathway -a DATA/NC_000913.NAP -e DATA/NC_000913.HEG -D DATA/expression-value -M