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IPpiRNAdb_v2

An update of the IPpiRNAdb initialy released at:

Larriba, E., del Mazo, J. An integrative piRNA analysis of mouse gametes and zygotes reveals new potential origins and gene regulatory roles. Sci Rep 8, 12832 (2018). https://doi.org/10.1038/s41598-018-31032-1

Downloadable compressed fasta file available at: https://drive.google.com/file/d/1NqSfGcrBSMYLfOyUaJ10djiQem7ZUfWE

Downloadable compressed BED file available at: https://drive.google.com/file/d/1NftShKgHb7ywEVFCI1q6uoQpaZdnGrLz

Script runing order

  1. IPdb_generator.sh
  2. ReadNormalization.R
  3. GetNonHec.R
  4. IPdb_hec_labelling.sh
  • piRbase_readsExtractor.pl
  • piRbase_seq_Extractor.pl

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piRNA IPdb

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