handle space in ontology filename

Dockerfile.base

@@ -1,4 +1,4 @@
-FROM amazoncorretto:8-alpine3.17
+FROM amazoncorretto:17-alpine3.17
 RUN mkdir -p playground ;\
     chmod 777 playground ; \
     mkdir -p playground/OnToology

Integrator/owl2jsonld.py

@@ -20,10 +20,12 @@ def build_owl2jsonld_file(ont_file, base_dir):
     ctabs = build_path(os.path.join(base_dir, get_target_home(), ont_file, tools_conf['owl2jsonld']['folder_name'],
                                     'context.jsonld'))
     dolog('ctabs %s' % ctabs)
-    comm = "cd " + get_parent_path(ctabs) + "; "  # Not neccesary
-    comm += timeout_comm + "java -jar "
-    comm += os.path.join(owl2jsonld_dir, "owl2jsonld-0.2.1-standalone.jar")  # ToolLocation
-    comm += " -o " + ctabs  # Output File
-    comm += " file://" + os.path.join(base_dir, ont_file)  # Ontology Location
+    comm = f" cd '{ get_parent_path(ctabs)}' ; {timeout_comm} java -jar "
+    comm += f" '{os.path.join(owl2jsonld_dir, 'owl2jsonld-0.2.1-standalone.jar')}'"
+    # comm += os.path.join(owl2jsonld_dir, 'owl2jsonld-0.2.1-standalone.jar')  # ToolLocation
+    comm += f" -o '{ctabs}'"
+    # comm += " -o " + ctabs  # Output File
+    comm += f" 'file://{os.path.join(base_dir, ont_file)}' "
+    # comm += ' file://' + os.path.join(base_dir, ont_file)  # Ontology Location
     dolog(comm)
     call(comm, shell=True)

Integrator/widoco.py

@@ -46,16 +46,13 @@ def create_widoco_doc(rdf_file, base_dir, languages, webVowl):
     except Exception as e:
         dolog('in create_widoco_doc: exception opening the file: ' + str(e))
     out_abs_dir = get_parent_path(config_file_abs)
-    comm = "cd " + base_dir + "; "
-    comm += timeout_comm + "java -jar "
+    comm = f"cd '{base_dir}'; {timeout_comm} java -jar "
     comm += ' -Dfile.encoding=utf-8 '
     comm += widoco_dir + "widoco.jar  -rewriteAll "
-    #comm += widoco_dir + "widoco-0.0.1-jar-with-dependencies.jar  "
-    comm += " -ontFile '" + rdf_file_abs
-    comm += "' -outFolder '" + out_abs_dir + "'"
+    comm += f" -ontFile '{rdf_file_abs}' -outFolder '{out_abs_dir}'"
+
     if use_conf_file:
-        comm += " -confFile " + config_file_abs
-        comm += " -crossRef"
+        comm += f" -confFile '{config_file_abs}' -crossRef"
     else:
         comm += " -getOntologyMetadata "
         comm += " -licensius "  # Only works if the -getOntologyMetadata flag is enabled.

README.md

@@ -203,3 +203,8 @@ Sometimes things happens and the processes or the APIs fail. Here are the common
 
 ## Debugging with Docker
 
+```
+docker-compose up
+docker ps
+docker exec -it <container name> /bin/sh 
+```