Ensure that residue search functions always return residues [ci skip]

Do this by using .residues() on the result of the search.
OpenBioSim · Oct 24, 2023 · 0ae9a3d · 0ae9a3d
1 parent 609cca8
commit 0ae9a3d
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/python/BioSimSpace/Sandpit/Exscientia/_SireWrappers/_system.py b/python/BioSimSpace/Sandpit/Exscientia/_SireWrappers/_system.py
@@ -2039,7 +2039,7 @@ def getAminoAcids(self, property_map={}):
         """
         search_string = "(resname " + ",".join(_prot_res) + ")"
         try:
-            residues = list(self.search(search_string, property_map))
+            residues = list(self.search(search_string, property_map).residues())
         except:
             residues = []
         return residues
@@ -2076,7 +2076,7 @@ def getNucleotides(self, property_map={}):
         """
         search_string = "(resname " + ",".join(_nucl_res) + ")"
         try:
-            residues = list(self.search(search_string, property_map))
+            residues = list(self.search(search_string, property_map).residues())
         except:
             residues = []
         return residues

diff --git a/python/BioSimSpace/_SireWrappers/_system.py b/python/BioSimSpace/_SireWrappers/_system.py
@@ -1958,7 +1958,7 @@ def getAminoAcids(self, property_map={}):
         """
         search_string = "(resname " + ",".join(_prot_res) + ")"
         try:
-            residues = list(self.search(search_string, property_map))
+            residues = list(self.search(search_string, property_map).residues())
         except:
             residues = []
         return residues
@@ -1995,7 +1995,7 @@ def getNucleotides(self, property_map={}):
         """
         search_string = "(resname " + ",".join(_nucl_res) + ")"
         try:
-            residues = list(self.search(search_string, property_map))
+            residues = list(self.search(search_string, property_map).residues())
         except:
             residues = []
         return residues