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ExampleMakefile
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ExampleMakefile
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# -*- makefile -*-
#
# For use with GNU make.
#
# $Id: ExampleMakefile 27 2007-07-24 16:52:51Z cpb $
#
#----------------------------------------------------------------------------------------------------------------------------------
# ExampleMakefile for compiling openCMISS examples
#
# Original by Chris Bradley adapted from the CMISS Makefile by Karl Tomlinson
# Changes:
#
#----------------------------------------------------------------------------------------------------------------------------------
#
# LICENSE
#
# Version: MPL 1.1/GPL 2.0/LGPL 2.1
#
# The contents of this file are subject to the Mozilla Public License
# Version 1.1 (the "License"); you may not use this file except in
# compliance with the License. You may obtain a copy of the License at
# http://www.mozilla.org/MPL/
#
# Software distributed under the License is distributed on an "AS IS"
# basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the
# License for the specific language governing rights and limitations
# under the License.
#
# The Original Code is openCMISS
#
# The Initial Developer of the Original Code is University of Auckland,
# Auckland, New Zealand and University of Oxford, Oxford, United
# Kingdom. Portions created by the University of Auckland and University
# of Oxford are Copyright (C) 2007 by the University of Auckland and
# the University of Oxford. All Rights Reserved.
#
# Contributor(s):
#
# Alternatively, the contents of this file may be used under the terms of
# either the GNU General Public License Version 2 or later (the "GPL"), or
# the GNU Lesser General Public License Version 2.1 or later (the "LGPL"),
# in which case the provisions of the GPL or the LGPL are applicable instead
# of those above. If you wish to allow use of your version of this file only
# under the terms of either the GPL or the LGPL, and not to allow others to
# use your version of this file under the terms of the MPL, indicate your
# decision by deleting the provisions above and replace them with the notice
# and other provisions required by the GPL or the LGPL. If you do not delete
# the provisions above, a recipient may use your version of this file under
# the terms of any one of the MPL, the GPL or the LGPL.
#
#----------------------------------------------------------------------------------------------------------------------------------
ifndef OPENCMISSEXTRAS_ROOT
OPENCMISSEXTRAS_ROOT := ../../opencmissextras
EXTERNAL_ROOT := $(CURDIR)/../../opencmissextras/cm/external
else
EXTERNAL_ROOT := ${OPENCMISSEXTRAS_ROOT}/cm/external
endif
include $(GLOBAL_ROOT)/utils/Makefile.inc
#----------------------------------------------------------------------------------------------------------------------------------
ifndef MPI
MPI := mpich2
endif
ifeq ($(MPI),mpich2)
MPI := mpich2
else
ifeq ($(MPI),intel)
ifeq ($(OPERATING_SYSTEM),linux)
ifdef I_MPI_ROOT
MPI := intel
else
$(error Intel MPI libraries not setup)
endif
else
$(error can only use intel mpi with Linux)
endif
else
ifeq ($(MPI),openmpi)
MPI := openmpi
else
$(error unknown MPI type - $(MPI))
endif
endif
endif
ifeq ($(MPIPROF),true)
ifeq ($(MPI),intel)
ifndef VT_ROOT
$(error intel trace collector not setup)
endif
ifndef VT_ADD_LIBS
$(error intel trace collector not setup)
endif
endif
endif
#----------------------------------------------------------------------------------------------------------------------------------
BASE_EXAMPLE_NAME = $(EXAMPLE_NAME)Example
EXAMPLE_ROOT = $(GLOBAL_ROOT)/examples/$(EXAMPLE_NAME)
BASE_EXE_NAME = $(BASE_EXAMPLE_NAME)
MAIN_SOURCE_DIR = $(GLOBAL_ROOT)/src
EXAMPLE_SOURCE_DIR = $(EXAMPLE_ROOT)/src
OBJECT_DIR := $(EXAMPLE_ROOT)/object/$(LIB_ARCH_DIR)$(MT_SUFFIX)$(DEBUG_SUFFIX)$(PROF_SUFFIX)$(COMPILER_SUFFIX)
MODULE_DIR := $(OBJECT_DIR)
EXE_DIR := $(EXAMPLE_ROOT)/bin/$(BIN_ARCH_DIR)
EXE_NAME := $(BASE_EXE_NAME)$(EXE_ABI_SUFFIX)$(MT_SUFFIX)$(DEBUG_SUFFIX)$(PROF_SUFFIX)$(COMPILER_SUFFIX)
EXECUTABLE := $(EXE_DIR)/$(EXE_NAME)
C_INCLUDE_DIRS := $(MAIN_SOURCE_DIR) \
$(EXAMPLE_SOURCE_DIR)
F_INCLUDE_DIRS := $(MODULE_DIR)
#----------------------------------------------------------------------------------------------------------------------------------
# compiling commands
ifeq ($(MPI),mpich2)
MPIFC = mpif90
MPICC = mpicc
else
MPIFC = mpiifort
MPICC = mpiicc
endif
FC = $(MPIFC)
CC = $(MPICC)
AR = ar
EXE_LINK = $(FC)
DSO_LINK = ld
DBGCF_FLGS = -g #OPT=false flags for C and fortran
# Option lists
# (suboption lists become more specific so that later ones overrule previous)
CFLAGS = $(strip $(CFL_FLGS) $(CFE_FLGS) $(CF_FLGS) $(C_FLGS))
FFLAGS = $(strip $(CFL_FLGS) $(CFE_FLGS) $(CF_FLGS) $(F_FLGS))
CPPFLAGS := $(addprefix -I, $(C_INCLUDE_DIRS) )
FPPFLAGS := $(addprefix -I, $(F_INCLUDE_DIRS) )
ELFLAGS = $(strip $(CFL_FLGS) $(L_FLGS) $(CFE_FLGS))
DLFLAGS = $(strip $(CFL_FLGS) $(L_FLGS) $(D_FLGS))
ifneq ($(DEBUG),false)
CFLAGS += $(strip $(DBGCF_FLGS) $(DBGC_FLGS))
FFLAGS += $(strip $(DBGCF_FLGS) $(DBGF_FLGS))
CPPFLAGS += -DDEBUG
else
ifneq ($(MPIPROF),false)
CFLAGS += $(strip $(DBGCF_FLGS) $(DBGC_FLGS))
FFLAGS += $(strip $(DBGCF_FLGS) $(DBGF_FLGS))
CPPFLAGS += -DDEBUG
else
CFLAGS += $(strip $(OPTCFE_FLGS) $(OPTCF_FLGS) $(OPTC_FLGS))
FFLAGS += $(strip $(OPTCFE_FLGS) $(OPTCF_FLGS) $(OPTF_FLGS))
ELFLAGS += $(OPTCFE_FLGS)
endif
endif
ifneq ($(MP),false)
CFLAGS += $(MP_FLGS)
FFLAGS += $(MP_FLGS)
endif
ARFLAGS = -cr
# suboption lists
CFL_FLGS =# flags for C fortran and linking
L_FLGS =# flags for linking only
CFE_FLGS =# flags for C fortran and linking executables only
CF_FLGS = -c# flags for C and fortran only
C_FLGS =# flags for C only
F_FLGS =# flags for fortran only
D_FLGS = -shared# for linking dynamic shared objects only
DBGC_FLGS =# OPT=false flags for C only
DBGF_FLGS =# OPT=false flags for fortran only
OPTCFE_FLGS =# OPT=true flags for C and fortran and linking executables
OPTCF_FLGS = -O#OPT=true flags for C and fortran only
OPTC_FLGS =# OPT=true flags for C only
OPTF_FLGS =# OPT=true flags for fortran only
# The list of objects may be too long for the operating system limit on
# argument length so the list of objects is stored in a file. This linker
# arguments for this file depend on the linker. If the linker cannot
# interpret such a file then try to use the shell and hope the list isn't too
# long.
olist_args = `cat $1`
#----------------------------------------------------------------------------------------------------------------------------------
ifeq ($(OPERATING_SYSTEM),linux)
OPTCF_FLGS =# Use separate flags for fortran and c
olist_args = $1
CC = gcc
FC = gfortran
ifeq ($(COMPILER),intel)
#Use Intel compilers if available (icc -V sends output to STDERR and exits with error).
ifneq (,$(shell icc -V 2>&1 | grep -i intel))
CC = icc
endif
ifneq (,$(shell ifort -V 2>&1 | grep -i intel))
FC = ifort
endif
endif
# Set the flags for the various different CC compilers
ifeq ($(CC),gcc)# gcc
C_FLGS += -pipe
# Position independent code is actually only required for objects
# in shared libraries but debug version may be built as shared libraries.
DBGC_FLGS += -fPIC
ifeq ($(filter $(INSTRUCTION),i686 ia64),)# not i686 nor ia64
C_FLGS += -m$(ABI)
endif
ifeq ($(MACHNAME),x86_64)
ifneq ($(shell grep Intel /proc/cpuinfo 2>/dev/null),)
C_FLGS += -march=nocona
endif
endif
DBGC_FLGS += -O0 -fbounds-check
OPTC_FLGS = -O3 -funroll-all-loops
ifeq ($(PROF),false)
ifneq ($(filter $(INSTRUCTION),i686 x86_64),)# i686 or x86_64
OPTC_FLGS += -momit-leaf-frame-pointer
endif
else
C_FLGS += -g -pg# -fprofile-arcs -ftest-coverage
endif
endif
ifeq ($(CC),icc)
# Turn on all warnings
C_FLGS += -Wall
ifeq ($(MACHNAME),x86_64)
ifneq ($(shell grep Intel /proc/cpuinfo 2>/dev/null),)
ifneq ($(shell grep Duo /proc/cpuinfo 2>/dev/null),)
ifneq ($(shell grep "Core(TM)2" /proc/cpuinfo 2>/dev/null),)
C_FLGS += -xT# Core2 Duo
else
C_FLGS += -x0# Core Duo
endif
else
C_FLGS += -xP# for sse3 (90nm Pentium 4 series)
endif
else
C_FLGS += -xW# Pentium4 compatible (?sse2)
endif
endif
ifeq ($(filter-out i%86,$(MACHNAME)),)
ifneq ($(shell grep sse2 /proc/cpuinfo 2>/dev/null),)
C_FLGS += -xN# for Pentium 4
endif
endif
DBGC_FLGS += -O0
OPTC_FLGS = -O3 -ansi_alias
ifneq ($(PROF),false)
C_FLGS += -g -pg -tcollect
ELFLAGS += -pg
endif
ifeq ($(MPIPROF),true)
ifeq ($(MPI),mpich2)
C_FLGS += -Wl,--export-dyanmic
DBGC_FLGS += -Wl,--export-dyanmic
else
C_FLGS += -tcollect
endif
endif
endif
ifeq ($(filter-out xlc%,$(CC)),)# xlc* C compiler
CFLAGS += -qinfo=gen:ini:por:pro:trd:tru:use
C_FLGS += -q$(ABI) -qarch=auto -qhalt=e
# -qinitauto for C is bytewise: 7F gives large integers.
DBGC_FLGS += -qfullpath -C -qflttrap=inv:en -qinitauto=7F
OPTC_FLGS += -O3
# for trailing _ on fortran symbols
CPPFLAGS += -Dunix
endif
# Set the flags for the various different Fortran compilers
ifeq ($(FC),gfortran)
#FC = /home/users/local/packages/gfortran/irun/bin/gfortran
# -fstatck-check
F_FLGS += -pipe -fno-second-underscore -Wall -x f95-cpp-input
# Restrict line length to 132
F_FLGS += -ffree-line-length-132
# for now change max identifier length. Should restrict to 63 (F2003) in future
F_FLGS += -fmax-identifier-length=63
# Position independent code is actually only required for objects
# in shared libraries but debug version may be built as shared libraries.
DBGF_FLGS += -fPIC
ifeq ($(filter $(INSTRUCTION),i686 ia64),)# i686 nor ia64
F_FLGS += -m$(ABI)
ELFLAGS += -m$(ABI)
endif
ifeq ($(MACHNAME),x86_64)
ifneq ($(shell grep Intel /proc/cpuinfo 2>/dev/null),)
F_FLGS += -march=nocona
endif
endif
DBGF_FLGS += -O0 -fbounds-check
OPTF_FLGS = -O3 -Wuninitialized -funroll-all-loops
ifeq ($(PROF),false)
ifneq ($(filter $(INSTRUCTION),i686 x86_64),)# i686 or x86_64
OPTF_FLGS += -momit-leaf-frame-pointer
endif
else
F_FLGS += -g -pg# -fprofile-arcs -ftest-coverage
ELFLAGS += -pg
endif
endif
ifeq ($(FC),g95)
F_FLAGS += -fno-second-underscore -Wall -std=f2003
DBGF_FLGS += -fPIC
ifeq ($(filter $(INSTRUCTION),i686 ia64),)# i686 nor ia64
F_FLGS += -m$(ABI)
ELFLAGS += -m$(ABI)
endif
DBGF_FLGS += -O0 -fbounds-check
OPTF_FLGS = -O3 -Wuninitialized -funroll-all-loops
#$(error g95 not implemented)
endif
ifeq ($(FC),ifort)
# turn on preprocessing,
# turn on warnings,
# warn about non-standard Fortran 95
F_FLGS += -cpp -w # -warn all
ifeq ($(MACHNAME),x86_64)
ifneq ($(shell grep Intel /proc/cpuinfo 2>/dev/null),)
ifneq ($(shell grep Duo /proc/cpuinfo 2>/dev/null),)
ifneq ($(shell grep "Core(TM)2" /proc/cpuinfo 2>/dev/null),)
F_FLGS += -xT# Core2 Duo
else
F_FLGS += -x0# Core Duo
endif
else
F_FLGS += -xP# for sse3 (90nm Pentium 4 series)
endif
else
F_FLGS += -xW# Pentium4 compatible (?sse2)
endif
endif
ifeq ($(filter-out i%86,$(MACHNAME)),)
ifneq ($(shell grep sse2 /proc/cpuinfo 2>/dev/null),)
F_FLGS += -xN# for Pentium 4
endif
endif
DBGF_FLGS += -O0 -check all -traceback -debug all
OPTF_FLGS = -O3
ifneq ($(PROF),false)
F_FLGS += -g -pg -tcollect
ELFLAGS += -pg
endif
ifeq ($(MPIPROF),true)
ifeq ($(MPI),mpich2)
F_FLAS += -Wl,--export-dyanmic
DBGF_FLGS += -Wl,--export-dyanmic
else
F_FLGS += -tcollect
endif
endif
# MP_FLGS = -openmp
ELFLAGS += -nofor_main -traceback
endif
ifeq ($(filter-out xlf%,$(FC)),)# xlf* fortran compiler
F_FLGS += -q$(ABI) -qarch=auto -qhalt=e -qextname -qsuffix=cpp=f90
ELFLAGS += -q$(ABI)
ifeq ($(ABI),64)
F_FLGS += -qwarn64
endif
ifeq ($(DEBUG),false)
MP_FLGS = -qsmp=omp
else
MP_FLGS = -qsmp=omp:noopt
endif
# -qinitauto for Fortran 7FF7FFFF is a large integer or NaNQ real*4 or NaNS real*8
DBGF_FLGS += -qfullpath -C -qflttrap=inv:en -qextchk -qinitauto=7FF7FFFF
OPTF_FLGS += -O3
endif
# Avoid versioning problems with libgcc_s by linking statically.
# libgcc2.c from gcc 3.4.4 says:
# In addition to the permissions in the GNU General Public License, the
# Free Software Foundation gives you unlimited permission to link the
# compiled version of this file into combinations with other programs,
# and to distribute those combinations without any restriction coming
# from the use of this file.
# (With dynamic version, should copy libgcc_s.so.N if copying libstdc++.so.N)
ELFLAGS += -static-libgcc
# Use the BSD timers
CPPFLAGS += -DBSD_TIMERS
endif
ifeq ($(OPERATING_SYSTEM),win32)
FC = gfortran
F_FLGS += -fno-second-underscore
OPTCF_FLGS = -O2
ELFLAGS += -Wl,-static
# Use the ANSI C timers
CPPFLAGS += -DANSI_C_TIMERS
olist_args = $1
endif
ifeq ($(OPERATING_SYSTEM),aix)
ifeq ($(MP),false)
FC = mpxlf95
CC = xlc
else
FC = mpxlf95_r
CC = xlc_r
endif
F_FLGS += -qsuffix=cpp=f90 -qnoextname
CFLAGS += -qinfo=gen:ini:por:pro:trd:tru:use
ELFLAGS += -q$(ABI)
CFE_FLGS += -q$(ABI) -qarch=auto -qhalt=e
L_FLGS += -b$(ABI)
D_FLGS = -G -bexpall -bnoentry
ifeq ($(ABI),32)
# Without -bmaxdata, the only one 256M virtual segment is available for
# data.
# In AIX 5.3, 0xAFFFFFFF is the largest value we can use here and still
# use global shared libraries. (see aixprggd/genprogc/lrg_prg_support.htm)
# However, 0xAFFFFFFF/dsa causes the system to crash on loading of perl
# modules (File::Find and Time::HiRes atleast). 0x80000000 seems to work.
# dsa allows segments to be allocated dynamically for shmat/mmap or data
# as required.
ELFLAGS += -bmaxdata:0x80000000/dsa
else
CF_FLGS += -qwarn64
# It seems that somewhere between AIX 5.1 and 5.3 the kernel loader
# started modifying a process's soft data resource limit to match to match
# its maxdata value (if non-zero). As 32-bit applications need a non-zero
# maxdata value to access more than 256M of data many applications
# (including perl) will cause the data limit to be lowered to a 32-bit
# addressable value. As cmiss is likely to be a child of such 32-bit
# processes, to access more than 32-bit addressable memory, it either
# needs to raise its data limit or use its own maxdata value.
# max heap size is 0x06FFFFFFFFFFFFF8
# Arbitrary. 0x0000100000000000 should provide ~16TB.
ELFLAGS += -bmaxdata:0x0000100000000000
endif
ifeq ($(DEBUG),false)
MP_FLGS = -qsmp=omp
else
MP_FLGS = -qsmp=omp:noopt
endif
# Should -qflttrap=nans be used as well or instead of -qflttrap=inv:en?
DBGCF_FLGS += -qfullpath -C -qflttrap=inv:en -qextchk
# -qinitauto for Fortran: 7FF7FFFF is a large integer or NaNQ real*4 or NaNS real*8
# -qinitauto for C is bytewise: 7F gives large integers.
DBGF_FLGS += -qinitauto=7FF7FFFF
DBGC_FLGS += -qinitauto=7F
OPTCF_FLGS = -O3
OPTC_FLGS += -qnoignerrno
olist_args = -f $1
# Use the BSD timers
CPPFLAGS += -DBSD_TIMERS
endif
# This returns an empty string if not found
searchdirs = $(firstword $(wildcard $(addsuffix /$(strip $2),$1)))
# This still returns the name of the desired file if not found and so is useful for error checking and reporting.
searchdirsforce = $(firstword $(wildcard $(addsuffix /$(strip $2),$1)) $2)
# Check that call function works (for searchdirs, olist_args, etc.)
ifeq ($(call olist_args,test),)
$(error call function not available. Use GNU make version 3.78 or newer)
endif
#ParMETIS
PARMETIS_LIBRARIES = -lparmetis -lmetis
PARMETIS_LIB_PATH =#
PARMETIS_INCLUDE_PATH =#
ifeq ($(OPERATING_SYSTEM),linux)# Linux
PARMETIS_LIB_PATH += $(addprefix -L, $(EXTERNAL_ROOT)/$(LIB_ARCH_DIR)$(DEBUG_SUFFIX)$(PROF_SUFFIX)$(COMPILER_SUFFIX)/lib/ )
else
ifeq ($(OPERATING_SYSTEM),aix)# AIX
PARMETIS_LIB_PATH += $(addprefix -L, $(EXTERNAL_ROOT)/$(LIB_ARCH_DIR)$(DEBUG_SUFFIX)$(PROF_SUFFIX)/lib/ )
else# windows
PARMETIS_LIB_PATH += $(addprefix -L, /home/users/local/lib/ )
endif
endif
#PETSc
PETSC_LIBRARIES = -lpetscts -lpetscsnes -lpetscdm -lpetscksp -lpetscmat -lpetscvec -lpetsc -lMrm -lXmu -lXm -lXt -lX11
PETSC_LIB_PATH =#
PETSC_INCLUDE_PATH =#
ifeq ($(OPERATING_SYSTEM),linux)# Linux
ifeq ($(DEBUG),false)
ifeq ($(MPI),mpich2)
PETSC_LIB_PATH += $(addprefix -L, $(EXTERNAL_ROOT)/$(LIB_ARCH_DIR)$(DEBUG_SUFFIX)$(PROF_SUFFIX)$(COMPILER_SUFFIX)/lib/linux-gnu-c-opt/ )
PETSC_INCLUDE_PATH += $(addprefix -I, $(EXTERNAL_ROOT)/$(LIB_ARCH_DIR)$(DEBUG_SUFFIX)$(PROF_SUFFIX)$(COMPILER_SUFFIX)/bmake/linux-gnu-c-opt/ )
else
PETSC_LIB_PATH += $(addprefix -L, $(EXTERNAL_ROOT)/$(LIB_ARCH_DIR)$(DEBUG_SUFFIX)$(COMPILER_SUFFIX)/lib/linux-gnu-c-opt/ )
PETSC_INCLUDE_PATH += $(addprefix -I, $(EXTERNAL_ROOT)/$(LIB_ARCH_DIR)$(DEBUG_SUFFIX)$(COMPILER_SUFFIX)/bmake/linux-gnu-c-opt/ )
endif
else
ifeq ($(MPI),mpich2)
PETSC_LIB_PATH += $(addprefix -L, $(EXTERNAL_ROOT)/$(LIB_ARCH_DIR)$(DEBUG_SUFFIX)$(PROF_SUFFIX)$(COMPILER_SUFFIX)/lib/linux-gnu-c-debug/ )
PETSC_INCLUDE_PATH += $(addprefix -I, $(EXTERNAL_ROOT)/$(LIB_ARCH_DIR)$(DEBUG_SUFFIX)$(PROF_SUFFIX)$(COMPILER_SUFFIX)/bmake/linux-gnu-c-debug/ )
else
PETSC_LIB_PATH += $(addprefix -L, $(EXTERNAL_ROOT)/$(LIB_ARCH_DIR)$(DEBUG_SUFFIX)$(COMPILER_SUFFIX)/lib/linux-gnu-c-debug/ )
PETSC_INCLUDE_PATH += $(addprefix -I, $(EXTERNAL_ROOT)/$(LIB_ARCH_DIR)$(DEBUG_SUFFIX)$(COMPILER_SUFFIX)/bmake/linux-gnu-c-debug/ )
endif
endif
ifeq ($(ABI),64)
PETSC_LIB_PATH += $(addprefix -L, /usr/X11R6/lib64/ )
PETSC_LIB_PATH += $(addprefix -L, /usr/lib64/ )
else
PETSC_LIB_PATH += $(addprefix -L, /usr/X11R6/lib/ )
PETSC_LIB_PATH += $(addprefix -L, /usr/lib/ )
endif
ifeq ($(MPI),mpich2)
PETSC_INCLUDE_PATH += $(addprefix -I, $(EXTERNAL_ROOT)/$(LIB_ARCH_DIR)$(DEBUG_SUFFIX)$(PROF_SUFFIX)$(COMPILER_SUFFIX)/ )
PETSC_INCLUDE_PATH += $(addprefix -I, $(EXTERNAL_ROOT)/$(LIB_ARCH_DIR)$(DEBUG_SUFFIX)$(PROF_SUFFIX)$(COMPILER_SUFFIX)/include/ )
else
PETSC_INCLUDE_PATH += $(addprefix -I, $(EXTERNAL_ROOT)/$(LIB_ARCH_DIR)$(DEBUG_SUFFIX)$(COMPILER_SUFFIX)/ )
PETSC_INCLUDE_PATH += $(addprefix -I, $(EXTERNAL_ROOT)/$(LIB_ARCH_DIR)$(DEBUG_SUFFIX)$(COMPILER_SUFFIX)/include/ )
endif
else
ifeq ($(OPERATING_SYSTEM),aix)# AIX
ifeq ($(DEBUG),false)
PETSC_LIB_PATH += $(addprefix -L, $(EXTERNAL_ROOT)/$(LIB_ARCH_DIR)$(DEBUG_SUFFIX)$(PROF_SUFFIX)/lib/aix-5.3.0.0-c-opt/ )
PETSC_INCLUDE_PATH += $(addprefix -I, $(EXTERNAL_ROOT)/$(LIB_ARCH_DIR)$(DEBUG_SUFFIX)$(PROF_SUFFIX)/bmake/aix-5.3.0.0-c-opt/ )
else
PETSC_LIB_PATH += $(addprefix -L, $(EXTERNAL_ROOT)/$(LIB_ARCH_DIR)$(DEBUG_SUFFIX)$(PROF_SUFFIX)/lib/aix-5.3.0.0-c-debug/ )
PETSC_INCLUDE_PATH += $(addprefix -I, $(EXTERNAL_ROOT)/$(LIB_ARCH_DIR)$(DEBUG_SUFFIX)$(PROF_SUFFIX)/bmake/aix-5.3.0.0-c-debug/ )
endif
PETSC_LIB_PATH += $(addprefix -L, /usr/X11R6/lib/ )
PETSC_INCLUDE_PATH += $(addprefix -I, $(EXTERNAL_ROOT)/$(LIB_ARCH_DIR)$(DEBUG_SUFFIX)$(PROF_SUFFIX)/ )
PETSC_INCLUDE_PATH += $(addprefix -I, $(EXTERNAL_ROOT)/$(LIB_ARCH_DIR)$(DEBUG_SUFFIX)$(PROF_SUFFIX)/include/ )
else# windows
PETSC_LIB_PATH += $(addprefix -L, /home/users/local/lib/ )
PETSC_INCLUDE_PATH = $(addprefix -I, /home/users/local/ )
endif
endif
#MPI
MPI_LIB_PATH =#
MPI_LIBRARIES =#
MPI_INCLUDE_PATH =#
ifeq ($(OPERATING_SYSTEM),linux)# Linux
ifeq ($(MPI),mpich2)
MPI_LIBRARIES += -lmpichf90
ifeq ($(MPIPROF),true)
MPI_LIBRARIES += -lmpe_f2cmpi -llmpe -lmpe
endif
MPI_LIBRARIES += -lmpich -lpthread -lrt
MPI_LIB_PATH += $(addprefix -L, $(EXTERNAL_ROOT)/$(LIB_ARCH_DIR)$(DEBUG_SUFFIX)$(PROF_SUFFIX)$(COMPILER_SUFFIX)/lib/ )
else
ifeq ($(MPI),intel)
ifeq ($(MPIPROF),true)
MPI_INCLUDE_PATH += $(addprefix -I, $(VT_ROOT)/include/ )
MPI_LIB_PATH += $(addprefix -L, $(VT_LIB_DIR) )
MPI_LIBRARIES += -lVT $(VT_ADD_LIBS)
endif
MPI_LIBRARIES += -lmpi -lmpiif -lmpigi -lrt -lpthread -ldl
ifeq ($(ABI),64)
MPI_INCLUDE_PATH += $(addprefix -I, $(I_MPI_ROOT)/include64/ )
MPI_LIB_PATH += $(addprefix -L, $(I_MPI_ROOT)/lib64/ )
else
MPI_INCLUDE_PATH += $(addprefix -I, $(I_MPI_ROOT)/include/ )
MPI_LIB_PATH += $(addprefix -L, $(I_MPI_ROOT)/lib/ )
endif
else
MPI_INCLUDE_PATH += $(addprefix -I, $(EXTERNAL_ROOT)/$(LIB_ARCH_DIR)$(DEBUG_SUFFIX)$(PROF_SUFFIX)$(COMPILER_SUFFIX)/lib/ )
MPI_LIBRARIES += -lmpi_f90 -lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl -lnsl -lutil
MPI_LIB_PATH += $(addprefix -L, $(EXTERNAL_ROOT)/$(LIB_ARCH_DIR)$(DEBUG_SUFFIX)$(PROF_SUFFIX)$(COMPILER_SUFFIX)/lib/ )
endif
endif
else
ifeq ($(OPERATING_SYSTEM),aix)# AIX
MPI_LIBRARIES = -lmpi
MPI_LIB_PATH += $(addprefix -L, /usr/lpp/ppe.poe/lib/ )
else# windows
MPI_LIBRARIES = -lmpichf90 -lmpich -lpthread -lrt
MPI_LIB_PATH += $(addprefix -L, /home/users/local/lib/ )
endif
endif
#BLAS/lapack
BLAS_LIB_PATH =#
BLAS_LIBRARIES =#
BLAS_INCLUDE_PATH =#
ifeq ($(OPERATING_SYSTEM),linux)# Linux
BLAS_LIBRARIES = -llapack -lblas
else
ifeq ($(OPERATING_SYSTEM),aix)# AIX
BLAS_LIBRARIES = -lessl
else# windows
BLAS_LIBRARIES = -llapack -lblas
endif
endif
EXTERNAL_LIBRARIES = $(strip $(PARMETIS_LIBRARIES) $(PETSC_LIBRARIES) $(MPI_LIBRARIES) $(BLAS_LIBRARIES))
EXTERNAL_LIB_PATH = $(strip $(PARMETIS_LIB_PATH) $(PETSC_LIB_PATH) $(MPI_LIB_PATH) $(BLAS_LIB_PATH))
EXTERNAL_INCLUDE_PATH = $(strip $(PARMETIS_INCLUDE_PATH) $(PETSC_INCLUDE_PATH) $(MPI_INCLUDE_PATH) $(BLAS_INCLUDE_PATH))
CPPFLAGS += $(EXTERNAL_INCLUDE_PATH)
FPPFLAGS += $(EXTERNAL_INCLUDE_PATH)
ELFLAGS += $(EXTERNAL_LIB_PATH)
.SUFFIXES: .f90 .c
$(OBJECT_DIR)/%.o : $(MAIN_SOURCE_DIR)/%.f90
( cd $(OBJECT_DIR) ; $(FC) -o $@ $(FFLAGS) $(FPPFLAGS) -c $< )
$(OBJECT_DIR)/%.o : $(EXAMPLE_SOURCE_DIR)/%.f90
( cd $(OBJECT_DIR) ; $(FC) -o $@ $(FFLAGS) $(FPPFLAGS) -c $< )
$(OBJECT_DIR)/%.o : $(MAIN_SOURCE_DIR)/%.c
( cd $(OBJECT_DIR) ; $(CC) -o $@ $(CFLAGS) $(CPPFLAGS) -c $< )
$(OBJECT_DIR)/%.o : $(EXAMPLE_SOURCE_DIR)/%.c
( cd $(OBJECT_DIR) ; $(CC) -o $@ $(CFLAGS) $(CPPFLAGS) -c $< )
OBJECTS = $(OBJECT_DIR)/$(BASE_EXAMPLE_NAME).o \
$(OBJECT_DIR)/analytic_analysis_routines.o \
$(OBJECT_DIR)/base_routines.o \
$(OBJECT_DIR)/basis_routines.o \
$(OBJECT_DIR)/bioelectric_routines.o \
$(OBJECT_DIR)/bioelec_domain_equation_routines.o \
$(OBJECT_DIR)/boundary_condition_routines.o \
$(OBJECT_DIR)/blas.o \
$(OBJECT_DIR)/classical_field_routines.o \
$(OBJECT_DIR)/cmiss.o \
$(OBJECT_DIR)/cmiss_cellml.o \
$(OBJECT_DIR)/cmiss_mpi.o \
$(OBJECT_DIR)/cmiss_parmetis.o \
$(OBJECT_DIR)/cmiss_petsc.o \
$(OBJECT_DIR)/cmiss_petsc_types.o \
$(OBJECT_DIR)/computational_environment.o \
$(OBJECT_DIR)/constants.o \
$(OBJECT_DIR)/control_loop_routines.o \
$(OBJECT_DIR)/coordinate_routines.o \
$(OBJECT_DIR)/diffusion_equation_routines.o \
$(OBJECT_DIR)/distributed_matrix_vector.o \
$(OBJECT_DIR)/distributed_matrix_vector_IO.o \
$(OBJECT_DIR)/domain_mappings.o \
$(OBJECT_DIR)/elasticity_routines.o \
$(OBJECT_DIR)/electromechanics_routines.o \
$(OBJECT_DIR)/equations_routines.o \
$(OBJECT_DIR)/equations_mapping_routines.o \
$(OBJECT_DIR)/equations_matrices_routines.o \
$(OBJECT_DIR)/equations_set_constants.o \
$(OBJECT_DIR)/equations_set_routines.o \
$(OBJECT_DIR)/field_routines.o \
$(OBJECT_DIR)/field_IO_routines.o\
$(OBJECT_DIR)/finite_elasticity_routines.o \
$(OBJECT_DIR)/fluid_mechanics_routines.o \
$(OBJECT_DIR)/FieldExport.o \
$(OBJECT_DIR)/generated_mesh_routines.o \
$(OBJECT_DIR)/Helmholtz_equations_routines.o \
$(OBJECT_DIR)/history_routines.o \
$(OBJECT_DIR)/input_output.o \
$(OBJECT_DIR)/iso_varying_string.o \
$(OBJECT_DIR)/kinds.o \
$(OBJECT_DIR)/Laplace_equations_routines.o \
$(OBJECT_DIR)/linear_elasticity_routines.o \
$(OBJECT_DIR)/lists.o \
$(OBJECT_DIR)/maths.o \
$(OBJECT_DIR)/matrix_vector.o \
$(OBJECT_DIR)/mesh_routines.o \
$(OBJECT_DIR)/node_routines.o \
$(OBJECT_DIR)/Poisson_equations_routines.o \
$(OBJECT_DIR)/problem_constants.o \
$(OBJECT_DIR)/problem_routines.o \
$(OBJECT_DIR)/region_routines.o \
$(OBJECT_DIR)/solver_routines.o \
$(OBJECT_DIR)/solver_mapping_routines.o \
$(OBJECT_DIR)/solver_matrices_routines.o \
$(OBJECT_DIR)/strings.o \
$(OBJECT_DIR)/timer_c.o \
$(OBJECT_DIR)/timer_f.o \
$(OBJECT_DIR)/trees.o \
$(OBJECT_DIR)/types.o
ifeq ($(OPERATING_SYSTEM),linux)# Linux
MACHINE_OBJECTS = $(OBJECT_DIR)/machine_constants_linux.o
else
ifeq ($(OPERATING_SYSTEM),aix)# AIX
MACHINE_OBJECTS = $(OBJECT_DIR)/machine_constants_aix.o
else# windows
MACHINE_OBJECTS = $(OBJECT_DIR)/machine_constants_windows.o
endif
endif
OBJECTS += $(MACHINE_OBJECTS)
main: preliminaries \
$(EXECUTABLE)
preliminaries: $(OBJECT_DIR) \
$(EXE_DIR)
$(OBJECT_DIR) :
mkdir -p $@
$(EXE_DIR) :
mkdir -p $@; \
$(EXECUTABLE) : $(OBJECTS)
$(EXE_LINK) -o $@ $(OBJECTS) $(ELFLAGS) $(EXTERNAL_LIBRARIES)
# Place the list of dependencies for the objects here.
#
# ----------------------------------------------------------------------------
ifeq ($(OPERATING_SYSTEM),aix)
#Need to disable argument list checking for MPI calls which may have multiple types for the same parameters
$(OBJECT_DIR)/computational_environment.o : DBGCF_FLGS = -qfullpath -C -qflttrap=inv:en
$(OBJECT_DIR)/distributed_matrix_vector.o : DBGCF_FLGS = -qfullpath -C -qflttrap=inv:en
$(OBJECT_DIR)/field_IO_routines.o : DBGCF_FLGS = -qfullpath -C -qflttrap=inv:en
#Need to disable argument list checking for c interface modules to allow for the c->fortran char->integer string conversion
$(OBJECT_DIR)/timer_c.o : DBGCF_FLGS = -qfullpath -C -qflttrap=inv:en
endif
$(OBJECT_DIR)/analytic_analysis_routines.o : $(MAIN_SOURCE_DIR)/analytic_analysis_routines.f90 \
$(OBJECT_DIR)/constants.o \
$(OBJECT_DIR)/field_routines.o \
$(OBJECT_DIR)/input_output.o \
$(OBJECT_DIR)/iso_varying_string.o \
$(OBJECT_DIR)/kinds.o \
$(OBJECT_DIR)/matrix_vector.o \
$(OBJECT_DIR)/strings.o \
$(OBJECT_DIR)/timer_f.o \
$(OBJECT_DIR)/types.o
$(OBJECT_DIR)/base_routines.o : $(MAIN_SOURCE_DIR)/base_routines.f90 \
$(OBJECT_DIR)/constants.o \
$(OBJECT_DIR)/kinds.o \
$(OBJECT_DIR)/iso_varying_string.o \
$(MACHINE_OBJECTS)
$(OBJECT_DIR)/basis_routines.o : $(MAIN_SOURCE_DIR)/basis_routines.f90 \
$(OBJECT_DIR)/base_routines.o \
$(OBJECT_DIR)/constants.o \
$(OBJECT_DIR)/input_output.o \
$(OBJECT_DIR)/iso_varying_string.o \
$(OBJECT_DIR)/kinds.o \
$(OBJECT_DIR)/strings.o \
$(OBJECT_DIR)/types.o
$(OBJECT_DIR)/blas.o : $(MAIN_SOURCE_DIR)/blas.f90 \
$(OBJECT_DIR)/kinds.o
$(OBJECT_DIR)/bioelectric_routines.o : $(MAIN_SOURCE_DIR)/bioelectric_routines.f90 \
$(OBJECT_DIR)/base_routines.o \
$(OBJECT_DIR)/bioelec_domain_equation_routines.o \
$(OBJECT_DIR)/equations_set_constants.o \
$(OBJECT_DIR)/iso_varying_string.o \
$(OBJECT_DIR)/kinds.o \
$(OBJECT_DIR)/problem_constants.o \
$(OBJECT_DIR)/strings.o \
$(OBJECT_DIR)/types.o
$(OBJECT_DIR)/bioelec_domain_equation_routines.o : $(MAIN_SOURCE_DIR)/bioelec_domain_equation_routines.f90 \
$(OBJECT_DIR)/base_routines.o \
$(OBJECT_DIR)/basis_routines.o \
$(OBJECT_DIR)/constants.o \
$(OBJECT_DIR)/control_loop_routines.o \
$(OBJECT_DIR)/distributed_matrix_vector.o \
$(OBJECT_DIR)/domain_mappings.o \
$(OBJECT_DIR)/equations_routines.o \
$(OBJECT_DIR)/equations_mapping_routines.o \
$(OBJECT_DIR)/equations_matrices_routines.o \
$(OBJECT_DIR)/equations_set_constants.o \
$(OBJECT_DIR)/field_routines.o \
$(OBJECT_DIR)/input_output.o \
$(OBJECT_DIR)/iso_varying_string.o \
$(OBJECT_DIR)/kinds.o \
$(OBJECT_DIR)/matrix_vector.o \
$(OBJECT_DIR)/problem_constants.o \
$(OBJECT_DIR)/strings.o \
$(OBJECT_DIR)/solver_routines.o \
$(OBJECT_DIR)/timer_f.o \
$(OBJECT_DIR)/types.o
$(OBJECT_DIR)/boundary_condition_routines.o : $(MAIN_SOURCE_DIR)/boundary_condition_routines.f90 \
$(OBJECT_DIR)/base_routines.o \
$(OBJECT_DIR)/constants.o \
$(OBJECT_DIR)/distributed_matrix_vector.o \
$(OBJECT_DIR)/equations_set_constants.o \
$(OBJECT_DIR)/field_routines.o \
$(OBJECT_DIR)/input_output.o \
$(OBJECT_DIR)/iso_varying_string.o \
$(OBJECT_DIR)/kinds.o \
$(OBJECT_DIR)/node_routines.o \
$(OBJECT_DIR)/strings.o \
$(OBJECT_DIR)/timer_f.o \
$(OBJECT_DIR)/types.o
$(OBJECT_DIR)/classical_field_routines.o : $(MAIN_SOURCE_DIR)/classical_field_routines.f90 \
$(OBJECT_DIR)/base_routines.o \
$(OBJECT_DIR)/diffusion_equation_routines.o \
$(OBJECT_DIR)/equations_set_constants.o \
$(OBJECT_DIR)/Helmholtz_equations_routines.o \
$(OBJECT_DIR)/iso_varying_string.o \
$(OBJECT_DIR)/kinds.o \
$(OBJECT_DIR)/Laplace_equations_routines.o \
$(OBJECT_DIR)/Poisson_equations_routines.o \
$(OBJECT_DIR)/problem_constants.o \
$(OBJECT_DIR)/strings.o \
$(OBJECT_DIR)/types.o \
$(MACHINE_OBJECTS)
$(OBJECT_DIR)/cmiss.o : $(MAIN_SOURCE_DIR)/cmiss.f90 \
$(OBJECT_DIR)/base_routines.o \
$(OBJECT_DIR)/basis_routines.o \
$(OBJECT_DIR)/computational_environment.o \
$(OBJECT_DIR)/constants.o \
$(OBJECT_DIR)/coordinate_routines.o \
$(OBJECT_DIR)/generated_mesh_routines.o \
$(OBJECT_DIR)/iso_varying_string.o \
$(OBJECT_DIR)/kinds.o \
$(OBJECT_DIR)/problem_routines.o \
$(OBJECT_DIR)/region_routines.o \
$(OBJECT_DIR)/strings.o \
$(OBJECT_DIR)/types.o \
$(MACHINE_OBJECTS)
$(OBJECT_DIR)/cmiss_cellml.o : $(MAIN_SOURCE_DIR)/cmiss_cellml.f90 \
$(OBJECT_DIR)/strings.o \
$(OBJECT_DIR)/types.o \
$(MACHINE_OBJECTS)
$(OBJECT_DIR)/cmiss_mpi.o : $(MAIN_SOURCE_DIR)/cmiss_mpi.f90 \
$(OBJECT_DIR)/base_routines.o \
$(OBJECT_DIR)/constants.o \
$(OBJECT_DIR)/kinds.o \
$(OBJECT_DIR)/iso_varying_string.o \
$(OBJECT_DIR)/strings.o
$(OBJECT_DIR)/cmiss_parmetis.o : $(MAIN_SOURCE_DIR)/cmiss_parmetis.f90 \
$(OBJECT_DIR)/base_routines.o \
$(OBJECT_DIR)/kinds.o \
$(OBJECT_DIR)/iso_varying_string.o
$(OBJECT_DIR)/cmiss_petsc.o : $(MAIN_SOURCE_DIR)/cmiss_petsc.f90 \
$(OBJECT_DIR)/base_routines.o \
$(OBJECT_DIR)/cmiss_petsc_types.o \
$(OBJECT_DIR)/kinds.o \
$(OBJECT_DIR)/iso_varying_string.o \
$(OBJECT_DIR)/types.o
$(OBJECT_DIR)/cmiss_petsc_types.o : $(MAIN_SOURCE_DIR)/cmiss_petsc_types.f90 \
$(OBJECT_DIR)/kinds.o
$(OBJECT_DIR)/computational_environment.o : $(MAIN_SOURCE_DIR)/computational_environment.f90 \
$(OBJECT_DIR)/base_routines.o \
$(OBJECT_DIR)/cmiss_mpi.o \
$(OBJECT_DIR)/cmiss_petsc.o \
$(OBJECT_DIR)/constants.o \
$(OBJECT_DIR)/kinds.o \
$(OBJECT_DIR)/input_output.o \
$(OBJECT_DIR)/iso_varying_string.o
$(OBJECT_DIR)/constants.o : $(MAIN_SOURCE_DIR)/constants.f90 \
$(OBJECT_DIR)/kinds.o
$(OBJECT_DIR)/control_loop_routines.o : $(MAIN_SOURCE_DIR)/control_loop_routines.f90 \
$(OBJECT_DIR)/base_routines.o \
$(OBJECT_DIR)/iso_varying_string.o \
$(OBJECT_DIR)/kinds.o \
$(OBJECT_DIR)/solver_routines.o \
$(OBJECT_DIR)/strings.o \
$(OBJECT_DIR)/types.o
$(OBJECT_DIR)/coordinate_routines.o : $(MAIN_SOURCE_DIR)/coordinate_routines.f90 \
$(OBJECT_DIR)/base_routines.o \
$(OBJECT_DIR)/constants.o \
$(OBJECT_DIR)/input_output.o \
$(OBJECT_DIR)/iso_varying_string.o \
$(OBJECT_DIR)/kinds.o \
$(OBJECT_DIR)/maths.o \
$(OBJECT_DIR)/strings.o \
$(OBJECT_DIR)/types.o
$(OBJECT_DIR)/diffusion_equation_routines.o : $(MAIN_SOURCE_DIR)/diffusion_equation_routines.f90 \
$(OBJECT_DIR)/base_routines.o \
$(OBJECT_DIR)/basis_routines.o \
$(OBJECT_DIR)/constants.o \
$(OBJECT_DIR)/control_loop_routines.o \
$(OBJECT_DIR)/distributed_matrix_vector.o \
$(OBJECT_DIR)/domain_mappings.o \
$(OBJECT_DIR)/equations_routines.o \
$(OBJECT_DIR)/equations_mapping_routines.o \
$(OBJECT_DIR)/equations_matrices_routines.o \
$(OBJECT_DIR)/equations_set_constants.o \
$(OBJECT_DIR)/field_routines.o \
$(OBJECT_DIR)/input_output.o \
$(OBJECT_DIR)/iso_varying_string.o \
$(OBJECT_DIR)/kinds.o \
$(OBJECT_DIR)/matrix_vector.o \
$(OBJECT_DIR)/problem_constants.o \
$(OBJECT_DIR)/strings.o \
$(OBJECT_DIR)/solver_routines.o \
$(OBJECT_DIR)/timer_f.o \
$(OBJECT_DIR)/types.o
$(OBJECT_DIR)/distributed_matrix_vector.o : $(MAIN_SOURCE_DIR)/distributed_matrix_vector.f90 \
$(OBJECT_DIR)/base_routines.o \
$(OBJECT_DIR)/cmiss_mpi.o \
$(OBJECT_DIR)/cmiss_petsc.o \
$(OBJECT_DIR)/computational_environment.o \
$(OBJECT_DIR)/input_output.o \
$(OBJECT_DIR)/iso_varying_string.o \
$(OBJECT_DIR)/kinds.o \
$(OBJECT_DIR)/matrix_vector.o \
$(OBJECT_DIR)/strings.o \
$(OBJECT_DIR)/types.o
$(OBJECT_DIR)/distributed_matrix_vector_IO.o : $(MAIN_SOURCE_DIR)/distributed_matrix_vector_IO.f90 \
$(OBJECT_DIR)/base_routines.o \
$(OBJECT_DIR)/iso_varying_string.o \
$(OBJECT_DIR)/kinds.o \
$(OBJECT_DIR)/strings.o \
$(OBJECT_DIR)/types.o
$(OBJECT_DIR)/domain_mappings.o : $(MAIN_SOURCE_DIR)/domain_mappings.f90 \
$(OBJECT_DIR)/base_routines.o \
$(OBJECT_DIR)/computational_environment.o \
$(OBJECT_DIR)/iso_varying_string.o \
$(OBJECT_DIR)/kinds.o \
$(OBJECT_DIR)/lists.o \
$(OBJECT_DIR)/strings.o \
$(OBJECT_DIR)/types.o
$(OBJECT_DIR)/elasticity_routines.o : $(MAIN_SOURCE_DIR)/elasticity_routines.f90 \
$(OBJECT_DIR)/base_routines.o \
$(OBJECT_DIR)/equations_set_constants.o \
$(OBJECT_DIR)/finite_elasticity_routines.o \
$(OBJECT_DIR)/iso_varying_string.o \
$(OBJECT_DIR)/kinds.o \
$(OBJECT_DIR)/linear_elasticity_routines.o \
$(OBJECT_DIR)/problem_constants.o \
$(OBJECT_DIR)/strings.o \
$(OBJECT_DIR)/types.o
$(OBJECT_DIR)/electromechanics_routines.o : $(MAIN_SOURCE_DIR)/electromechanics_routines.f90 \
$(OBJECT_DIR)/base_routines.o \
$(OBJECT_DIR)/kinds.o \
$(OBJECT_DIR)/types.o
$(OBJECT_DIR)/equations_routines.o : $(MAIN_SOURCE_DIR)/equations_routines.f90 \
$(OBJECT_DIR)/base_routines.o \
$(OBJECT_DIR)/equations_mapping_routines.o \
$(OBJECT_DIR)/equations_matrices_routines.o \
$(OBJECT_DIR)/equations_set_constants.o \
$(OBJECT_DIR)/field_routines.o \
$(OBJECT_DIR)/iso_varying_string.o \
$(OBJECT_DIR)/kinds.o \
$(OBJECT_DIR)/strings.o \
$(OBJECT_DIR)/types.o
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