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tests.py
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tests.py
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from unittest.mock import patch, Mock, mock_open
import boto3
from botocore.exceptions import ClientError
from colour_runner.django_runner import ColourRunnerMixin
from django.conf import settings
from django.core.management import call_command
from django.test import TestCase
from django.test.runner import DiscoverRunner
from moto import mock_s3
from core.collections.models import Collection
from core.common.constants import HEAD, OCL_ORG_ID, SUPER_ADMIN_USER_ID
from core.common.utils import compact_dict_by_values
from core.concepts.models import Concept, LocalizedText
from core.mappings.models import Mapping
from core.orgs.models import Organization
from core.sources.models import Source
from core.users.models import UserProfile
from .services import S3
class CustomTestRunner(ColourRunnerMixin, DiscoverRunner):
pass
class PauseElasticSearchIndex:
settings.ELASTICSEARCH_DSL_AUTOSYNC = False
class OCLTestCase(TestCase, PauseElasticSearchIndex):
@classmethod
def setUpClass(cls):
super().setUpClass()
call_command("loaddata", "core/fixtures/base_entities.yaml")
def tearDown(self):
Collection.objects.all().delete()
Mapping.objects.all().delete()
Concept.objects.all().delete()
LocalizedText.objects.all().delete()
Source.objects.all().delete()
Organization.objects.exclude(id=OCL_ORG_ID).all().delete()
UserProfile.objects.exclude(id=SUPER_ADMIN_USER_ID).all().delete()
@staticmethod
def create_lookup_concept_classes(user=None, org=None):
from core.sources.tests.factories import SourceFactory
from core.concepts.tests.factories import LocalizedTextFactory, ConceptFactory
org = org or Organization.objects.get(mnemonic='OCL')
user = user or UserProfile.objects.get(username='ocladmin')
classes_source = SourceFactory(updated_by=user, organization=org, mnemonic="Classes", version=HEAD)
datatypes_source = SourceFactory(updated_by=user, organization=org, mnemonic="Datatypes", version=HEAD)
nametypes_source = SourceFactory(updated_by=user, organization=org, mnemonic="NameTypes", version=HEAD)
descriptiontypes_source = SourceFactory(
updated_by=user, organization=org, mnemonic="DescriptionTypes", version=HEAD
)
maptypes_source = SourceFactory(updated_by=user, organization=org, mnemonic="MapTypes", version=HEAD)
locales_source = SourceFactory(updated_by=user, organization=org, mnemonic="Locales", version=HEAD)
ConceptFactory(
version=HEAD, updated_by=user, parent=classes_source, concept_class="Concept Class",
names=[LocalizedTextFactory(name="Diagnosis")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=classes_source, concept_class="Concept Class",
names=[LocalizedTextFactory(name="Drug")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=classes_source, concept_class="Concept Class",
names=[LocalizedTextFactory(name="Test")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=classes_source, concept_class="Concept Class",
names=[LocalizedTextFactory(name="Procedure")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=datatypes_source, concept_class="Datatype",
names=[LocalizedTextFactory(name="None"), LocalizedTextFactory(name="N/A")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=datatypes_source, concept_class="Datatype",
names=[LocalizedTextFactory(name="Numeric")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=datatypes_source, concept_class="Datatype",
names=[LocalizedTextFactory(name="Coded")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=datatypes_source, concept_class="Datatype",
names=[LocalizedTextFactory(name="Text")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=nametypes_source, concept_class="NameType",
names=[LocalizedTextFactory(name="FULLY_SPECIFIED"), LocalizedTextFactory(name="Fully Specified")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=nametypes_source, concept_class="NameType",
names=[LocalizedTextFactory(name="Short"), LocalizedTextFactory(name="SHORT")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=nametypes_source, concept_class="NameType",
names=[LocalizedTextFactory(name="INDEX_TERM"), LocalizedTextFactory(name="Index Term")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=nametypes_source, concept_class="NameType",
names=[LocalizedTextFactory(name="None")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=descriptiontypes_source, concept_class="DescriptionType",
names=[LocalizedTextFactory(name="None")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=descriptiontypes_source, concept_class="DescriptionType",
names=[LocalizedTextFactory(name="FULLY_SPECIFIED")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=descriptiontypes_source, concept_class="DescriptionType",
names=[LocalizedTextFactory(name="Definition")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=maptypes_source, concept_class="MapType",
names=[LocalizedTextFactory(name="SAME-AS"), LocalizedTextFactory(name="Same As")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=maptypes_source, concept_class="MapType",
names=[LocalizedTextFactory(name="Is Subset of")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=maptypes_source, concept_class="MapType",
names=[LocalizedTextFactory(name="Different")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=maptypes_source, concept_class="MapType",
names=[
LocalizedTextFactory(name="BROADER-THAN"), LocalizedTextFactory(name="Broader Than"),
LocalizedTextFactory(name="BROADER_THAN")
]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=maptypes_source, concept_class="MapType",
names=[
LocalizedTextFactory(name="NARROWER-THAN"), LocalizedTextFactory(name="Narrower Than"),
LocalizedTextFactory(name="NARROWER_THAN")
]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=maptypes_source, concept_class="MapType",
names=[LocalizedTextFactory(name="Q-AND-A")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=maptypes_source, concept_class="MapType",
names=[LocalizedTextFactory(name="More specific than")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=maptypes_source, concept_class="MapType",
names=[LocalizedTextFactory(name="Less specific than")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=maptypes_source, concept_class="MapType",
names=[LocalizedTextFactory(name="Something Else")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=locales_source, concept_class="Locale",
names=[LocalizedTextFactory(name="en")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=locales_source, concept_class="Locale",
names=[LocalizedTextFactory(name="es")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=locales_source, concept_class="Locale",
names=[LocalizedTextFactory(name="fr")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=locales_source, concept_class="Locale",
names=[LocalizedTextFactory(name="tr")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=locales_source, concept_class="Locale",
names=[LocalizedTextFactory(name="Abkhazian")]
)
ConceptFactory(
version=HEAD, updated_by=user, parent=locales_source, concept_class="Locale",
names=[LocalizedTextFactory(name="English")]
)
class S3Test(TestCase):
@mock_s3
def test_upload(self):
_conn = boto3.resource('s3', region_name='us-east-1')
_conn.create_bucket(Bucket='ocl-api-dev')
S3.upload('some/path', 'content')
self.assertEqual(
_conn.Object(
'ocl-api-dev',
'some/path'
).get()['Body'].read().decode("utf-8"),
'content'
)
@patch('core.common.services.S3._conn')
def test_upload_public(self, client_mock):
conn_mock = Mock()
conn_mock.upload_fileobj = Mock(return_value='success')
client_mock.return_value = conn_mock
self.assertEqual(S3.upload_public('some/path', 'content'), 'success')
conn_mock.upload_fileobj.assert_called_once_with(
'content',
'ocl-api-dev',
'some/path',
ExtraArgs={'ACL': 'public-read'},
)
def test_upload_file(self):
with patch("builtins.open", mock_open(read_data="file-content")) as mock_file:
S3.upload = Mock(return_value=200)
file_path = "path/to/file.ext"
res = S3.upload_file(key=file_path, headers={'header1': 'val1'})
self.assertEqual(res, 200)
S3.upload.assert_called_once_with(file_path, 'file-content', {'header1': 'val1'})
mock_file.assert_called_once_with(file_path, 'r')
@mock_s3
def test_remove(self):
_conn = boto3.resource('s3', region_name='us-east-1')
_conn.create_bucket(Bucket='ocl-api-dev')
S3.upload('some/path', 'content')
self.assertEqual(
_conn.Object(
'ocl-api-dev',
'some/path'
).get()['Body'].read().decode("utf-8"),
'content'
)
S3.remove(key='some/path')
with self.assertRaises(ClientError):
_conn.Object('ocl-api-dev', 'some/path').get()
@mock_s3
def test_url_for(self):
_conn = boto3.resource('s3', region_name='us-east-1')
_conn.create_bucket(Bucket='ocl-api-dev')
S3.upload('some/path', 'content')
_url = S3.url_for('some/path')
self.assertTrue(
'https://ocl-api-dev.s3.amazonaws.com/some/path' in _url
)
self.assertTrue(
'&X-Amz-Credential=' in _url
)
self.assertTrue(
'&X-Amz-Signature=' in _url
)
self.assertTrue(
'X-Amz-Expires=' in _url
)
def test_public_url_for(self):
self.assertEqual(
S3.public_url_for('some/path'),
'http://ocl-api-dev.s3.amazonaws.com/some/path'
)
class UtilsTest(OCLTestCase):
def test_compact_dict_by_values(self):
self.assertEqual(
compact_dict_by_values(dict()),
dict()
)
self.assertEqual(
compact_dict_by_values(dict(foo=None)),
dict()
)
self.assertEqual(
compact_dict_by_values(dict(foo=None, bar=None)),
dict()
)
self.assertEqual(
compact_dict_by_values(dict(foo=None, bar=1)),
dict(bar=1)
)
self.assertEqual(
compact_dict_by_values(dict(foo=2, bar=1)),
dict(foo=2, bar=1)
)
self.assertEqual(
compact_dict_by_values(dict(foo=2, bar='')),
dict(foo=2)
)