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serializers.py
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serializers.py
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from datetime import datetime
from django.core.validators import RegexValidator
from pydash import get
from rest_framework.fields import CharField, ChoiceField, ListField, IntegerField, DateTimeField, JSONField, \
BooleanField, SerializerMethodField
from rest_framework.relations import PrimaryKeyRelatedField
from rest_framework.serializers import ModelSerializer, Serializer
from core.client_configs.serializers import ClientConfigSerializer
from core.collections.constants import INCLUDE_REFERENCES_PARAM
from core.collections.models import Collection, CollectionReference, Expansion
from core.common.constants import HEAD, DEFAULT_ACCESS_TYPE, NAMESPACE_REGEX, ACCESS_TYPE_CHOICES, INCLUDE_SUMMARY, \
INCLUDE_CLIENT_CONFIGS, INVALID_EXPANSION_URL
from core.orgs.models import Organization
from core.settings import DEFAULT_LOCALE
from core.users.models import UserProfile
class CollectionMinimalSerializer(ModelSerializer):
id = CharField(source='mnemonic')
class Meta:
model = Collection
fields = ('id', 'url')
class CollectionListSerializer(ModelSerializer):
short_code = CharField(source='mnemonic')
owner = CharField(source='parent_resource')
owner_type = CharField(source='parent_resource_type')
owner_url = CharField(source='parent_url')
id = CharField(source='mnemonic')
class Meta:
model = Collection
fields = (
'short_code', 'name', 'url', 'owner', 'owner_type', 'owner_url', 'version', 'created_at', 'id',
'collection_type', 'updated_at', 'canonical_url', 'autoexpand_head'
)
class CollectionVersionListSerializer(ModelSerializer):
type = CharField(source='resource_version_type')
short_code = CharField(source='mnemonic')
owner = CharField(source='parent_resource')
owner_type = CharField(source='parent_resource_type')
owner_url = CharField(source='parent_url')
id = CharField(source='version')
version_url = CharField(source='uri')
url = CharField(source='versioned_object_url')
previous_version_url = CharField(source='prev_version_uri')
autoexpand = BooleanField(source='should_auto_expand')
expansion_url = CharField(source='expansion_uri', read_only=True)
class Meta:
model = Collection
fields = (
'type', 'short_code', 'name', 'url', 'canonical_url', 'owner', 'owner_type', 'owner_url', 'version',
'created_at', 'id', 'collection_type', 'updated_at', 'released', 'retired', 'version_url',
'previous_version_url', 'autoexpand', 'expansion_url',
)
class CollectionCreateOrUpdateSerializer(ModelSerializer):
class Meta:
model = Collection
lookup_field = 'mnemonic'
fields = (
'__all__'
)
def prepare_object(self, validated_data, instance=None):
collection = instance if instance else Collection()
collection.version = validated_data.get('version', collection.version) or HEAD
collection.mnemonic = validated_data.get(self.Meta.lookup_field, collection.mnemonic)
collection.public_access = validated_data.get('public_access', collection.public_access or DEFAULT_ACCESS_TYPE)
collection.default_locale = validated_data.get('default_locale', collection.default_locale or DEFAULT_LOCALE)
supported_locales = validated_data.get('supported_locales')
if not supported_locales:
supported_locales = collection.supported_locales
if supported_locales and isinstance(supported_locales, str):
supported_locales = supported_locales.split(',')
collection.supported_locales = supported_locales or [collection.default_locale]
for attr in [
'experimental', 'locked_date', 'text', 'revision_date', 'immutable', 'copyright', 'purpose',
'jurisdiction', 'contact', 'publisher', 'identifier', 'canonical_url', 'retired', 'released',
'organization', 'user', 'organization_id', 'user_id', 'external_id', 'extras', 'preferred_source',
'repository_type', 'custom_resources_linked_source', 'website', 'custom_validation_schema',
'collection_type', 'description', 'name', 'meta',
]:
setattr(collection, attr, validated_data.get(attr, get(collection, attr)))
collection.full_name = validated_data.get('full_name', collection.full_name) or collection.name
collection.autoexpand_head = validated_data.get('autoexpand_head', collection.autoexpand_head)
collection.autoexpand = validated_data.get('autoexpand', collection.autoexpand)
collection.expansion_uri = validated_data.get('expansion_uri', collection.expansion_uri)
if collection.id and collection.expansion_uri and not collection.expansions.filter(
uri=collection.expansion_uri).exists():
self._errors.update({'expansion_url': INVALID_EXPANSION_URL})
return collection
def update(self, instance, validated_data):
original_schema = instance.custom_validation_schema
collection = self.prepare_object(validated_data, instance)
if self._errors:
return collection
user = self.context['request'].user
errors = Collection.persist_changes(collection, user, original_schema)
self._errors.update(errors)
return collection
class CollectionCreateSerializer(CollectionCreateOrUpdateSerializer):
type = CharField(source='resource_type', read_only=True)
uuid = CharField(source='id', read_only=True)
id = CharField(required=True, validators=[RegexValidator(regex=NAMESPACE_REGEX)], source='mnemonic')
short_code = CharField(source='mnemonic', read_only=True)
name = CharField(required=True)
full_name = CharField(required=False)
description = CharField(required=False, allow_blank=True)
text = CharField(required=False, allow_blank=True)
collection_type = CharField(required=False)
custom_validation_schema = CharField(required=False, allow_blank=True, allow_null=True)
public_access = ChoiceField(required=False, choices=ACCESS_TYPE_CHOICES)
default_locale = CharField(required=False, allow_blank=True)
supported_locales = ListField(required=False, allow_empty=True)
website = CharField(required=False, allow_blank=True)
url = CharField(read_only=True)
canonical_url = CharField(required=False, allow_null=True, allow_blank=True)
custom_resources_linked_source = CharField(required=False, allow_null=True, allow_blank=True)
repository_type = CharField(required=False, allow_null=True, allow_blank=True)
preferred_source = CharField(required=False, allow_null=True, allow_blank=True)
versions_url = CharField(read_only=True)
concepts_url = CharField(read_only=True)
mappings_url = CharField(read_only=True)
owner = CharField(source='parent_resource', read_only=True)
owner_type = CharField(source='parent_resource_type', read_only=True)
owner_url = CharField(source='parent_url', read_only=True)
versions = IntegerField(source='num_versions', read_only=True)
created_on = DateTimeField(source='created_at', read_only=True)
updated_on = DateTimeField(source='updated_at', read_only=True)
created_by = CharField(source='owner', read_only=True)
updated_by = CharField(read_only=True)
extras = JSONField(required=False, allow_null=True)
external_id = CharField(required=False, allow_blank=True)
user_id = PrimaryKeyRelatedField(required=False, queryset=UserProfile.objects.all(), allow_null=True)
organization_id = PrimaryKeyRelatedField(required=False, queryset=Organization.objects.all(), allow_null=True)
version = CharField(default=HEAD)
identifier = JSONField(required=False, allow_null=True)
contact = JSONField(required=False, allow_null=True)
jurisdiction = JSONField(required=False, allow_null=True)
meta = JSONField(required=False, allow_null=True)
publisher = CharField(required=False, allow_null=True, allow_blank=True)
purpose = CharField(required=False, allow_null=True, allow_blank=True)
copyright = CharField(required=False, allow_null=True, allow_blank=True)
experimental = BooleanField(required=False, allow_null=True, default=None)
locked_date = DateTimeField(required=False, allow_null=True)
autoexpand_head = BooleanField(required=False, default=True)
autoexpand = BooleanField(required=False, default=True)
def create(self, validated_data):
collection = self.prepare_object(validated_data)
user = self.context['request'].user
errors = Collection.persist_new(collection, user)
self._errors.update(errors)
return collection
def create_version(self, validated_data):
collection = self.prepare_object(validated_data)
user = self.context['request'].user
errors = Collection.persist_new_version(collection, user)
self._errors.update(errors)
return collection
class ExpansionSummarySerializer(ModelSerializer):
class Meta:
model = Expansion
fields = ('active_concepts', 'active_mappings')
class ExpansionSummaryDetailSerializer(ExpansionSummarySerializer):
class Meta:
model = Expansion
fields = ExpansionSummarySerializer.Meta.fields + ('id', 'mnemonic')
class CollectionSummarySerializer(ModelSerializer):
versions = IntegerField(source='num_versions')
expansions = IntegerField(source='expansions_count')
class Meta:
model = Collection
fields = ('active_mappings', 'active_concepts', 'versions', 'active_references', 'expansions')
class CollectionSummaryDetailSerializer(CollectionSummarySerializer):
uuid = CharField(source='id')
id = CharField(source='mnemonic')
class Meta:
model = Collection
fields = (
*CollectionSummarySerializer.Meta.fields, 'id', 'uuid',
)
class CollectionVersionSummarySerializer(ModelSerializer):
expansions = IntegerField(source='expansions_count')
class Meta:
model = Collection
fields = ('active_mappings', 'active_concepts', 'active_references', 'expansions')
class CollectionVersionSummaryDetailSerializer(CollectionVersionSummarySerializer):
uuid = CharField(source='id')
id = CharField(source='version')
class Meta:
model = Collection
fields = (
*CollectionVersionSummarySerializer.Meta.fields, 'id', 'uuid',
)
class CollectionDetailSerializer(CollectionCreateOrUpdateSerializer):
type = CharField(source='resource_type')
uuid = CharField(source='id')
id = CharField(source='mnemonic')
short_code = CharField(source='mnemonic')
owner = CharField(source='parent_resource')
owner_type = CharField(source='parent_resource_type')
owner_url = CharField(source='parent_url')
created_on = DateTimeField(source='created_at')
updated_on = DateTimeField(source='updated_at')
supported_locales = ListField(required=False, allow_empty=True)
created_by = CharField(read_only=True, source='created_by.username')
updated_by = CharField(read_only=True, source='updated_by.username')
references = SerializerMethodField()
summary = SerializerMethodField()
client_configs = SerializerMethodField()
expansion_url = CharField(source='expansion_uri', read_only=True, allow_null=True, allow_blank=True)
class Meta:
model = Collection
lookup_field = 'mnemonic'
fields = (
'type', 'uuid', 'id', 'short_code', 'name', 'full_name', 'description', 'collection_type',
'custom_validation_schema', 'public_access', 'default_locale', 'supported_locales', 'website',
'url', 'owner', 'owner_type', 'owner_url',
'created_on', 'updated_on', 'created_by', 'updated_by', 'extras', 'external_id', 'versions_url',
'version', 'concepts_url', 'mappings_url', 'expansions_url',
'custom_resources_linked_source', 'repository_type', 'preferred_source', 'references',
'canonical_url', 'identifier', 'publisher', 'contact', 'jurisdiction', 'purpose', 'copyright', 'meta',
'immutable', 'revision_date', 'logo_url', 'summary', 'text', 'client_configs',
'experimental', 'locked_date', 'autoexpand_head', 'expansion_url'
)
def __init__(self, *args, **kwargs):
params = get(kwargs, 'context.request.query_params')
self.query_params = {}
if params:
self.query_params = params if isinstance(params, dict) else params.dict()
self.include_summary = self.query_params.get(INCLUDE_SUMMARY) in ['true', True]
self.include_client_configs = self.query_params.get(INCLUDE_CLIENT_CONFIGS) in ['true', True]
try:
if not self.include_summary:
self.fields.pop('summary', None)
if not self.include_client_configs:
self.fields.pop('client_configs', None)
except: # pylint: disable=bare-except
pass
super().__init__(*args, **kwargs)
def get_summary(self, obj):
summary = None
if self.include_summary:
summary = CollectionSummarySerializer(obj).data
return summary
def get_client_configs(self, obj):
if self.include_client_configs:
return ClientConfigSerializer(obj.client_configs.filter(is_active=True), many=True).data
return None
def get_references(self, obj):
if self.context.get(INCLUDE_REFERENCES_PARAM, False):
return CollectionReferenceSerializer(obj.references.all(), many=True).data
return []
class CollectionVersionDetailSerializer(CollectionCreateOrUpdateSerializer):
type = CharField(source='resource_version_type')
uuid = CharField(source='id')
id = CharField(source='version')
short_code = CharField(source='mnemonic')
owner = CharField(source='parent_resource')
owner_type = CharField(source='parent_resource_type')
owner_url = CharField(source='parent_url')
created_on = DateTimeField(source='created_at')
updated_on = DateTimeField(source='updated_at')
supported_locales = ListField(required=False, allow_empty=True)
is_processing = BooleanField(read_only=True)
released = BooleanField(default=False)
version_url = CharField(source='uri')
url = CharField(source='versioned_object_url')
previous_version_url = CharField(source='prev_version_uri')
created_by = CharField(read_only=True, source='created_by.username')
updated_by = CharField(read_only=True, source='updated_by.username')
summary = SerializerMethodField()
autoexpand = SerializerMethodField()
expansion_url = CharField(source='expansion_uri', allow_null=True, allow_blank=True)
class Meta:
model = Collection
lookup_field = 'mnemonic'
fields = (
'type', 'uuid', 'id', 'short_code', 'name', 'full_name', 'description', 'collection_type',
'custom_validation_schema', 'public_access', 'default_locale', 'supported_locales', 'website',
'url', 'owner', 'owner_type', 'owner_url', 'version_url', 'previous_version_url',
'created_on', 'updated_on', 'created_by', 'updated_by', 'extras', 'external_id', 'version',
'version', 'concepts_url', 'mappings_url', 'expansions_url', 'is_processing', 'released', 'retired',
'canonical_url', 'identifier', 'publisher', 'contact', 'jurisdiction', 'purpose', 'copyright', 'meta',
'immutable', 'revision_date', 'summary', 'text', 'experimental', 'locked_date',
'autoexpand', 'expansion_url'
)
def __init__(self, *args, **kwargs):
params = get(kwargs, 'context.request.query_params')
self.include_summary = False
if params:
self.query_params = params.dict()
self.include_summary = self.query_params.get(INCLUDE_SUMMARY) in ['true', True]
try:
if not self.include_summary:
self.fields.pop('summary', None)
except: # pylint: disable=bare-except
pass
super().__init__(*args, **kwargs)
def get_summary(self, obj):
summary = None
if self.include_summary:
summary = CollectionVersionSummarySerializer(obj).data
return summary
@staticmethod
def get_autoexpand(obj):
return obj.should_auto_expand
class CollectionReferenceSerializer(ModelSerializer):
reference_type = CharField(read_only=True)
uuid = CharField(source='id', read_only=True)
class Meta:
model = CollectionReference
fields = ('expression', 'reference_type', 'id', 'last_resolved_at', 'uri', 'uuid', 'include')
class CollectionReferenceDetailSerializer(CollectionReferenceSerializer):
concepts = IntegerField(source='concepts_count', read_only=True)
mappings = IntegerField(source='mappings_count', read_only=True)
class Meta:
model = CollectionReference
fields = (
*CollectionReferenceSerializer.Meta.fields,
'code', 'resource_version', 'namespace', 'system', 'version', 'valueset', 'cascade', 'filter', 'display',
'created_at', 'updated_at', 'concepts', 'mappings'
)
class CollectionVersionExportSerializer(CollectionVersionDetailSerializer):
collection = JSONField(source='snapshot')
class Meta:
model = Collection
fields = (
*CollectionVersionDetailSerializer.Meta.fields, 'collection'
)
class ExpansionSerializer(ModelSerializer):
summary = SerializerMethodField()
url = CharField(source='uri', read_only=True)
parameters = JSONField()
class Meta:
model = Expansion
fields = ('mnemonic', 'id', 'parameters', 'canonical_url', 'url', 'summary', 'is_processing')
def __init__(self, *args, **kwargs):
params = get(kwargs, 'context.request.query_params')
self.include_summary = False
if params:
self.query_params = params.dict()
self.include_summary = self.query_params.get(INCLUDE_SUMMARY) in ['true', True]
try:
if not self.include_summary:
self.fields.pop('summary', None)
except: # pylint: disable=bare-except
pass
super().__init__(*args, **kwargs)
def get_summary(self, obj):
summary = None
if self.include_summary:
summary = ExpansionSummarySerializer(obj).data
return summary
class ExpansionDetailSerializer(ModelSerializer):
summary = SerializerMethodField()
url = CharField(source='uri', read_only=True)
parameters = JSONField()
created_on = DateTimeField(source='created_at', read_only=True)
created_by = DateTimeField(source='created_by.username', read_only=True)
class Meta:
model = Expansion
fields = (
'mnemonic', 'id', 'parameters', 'canonical_url', 'url', 'summary', 'created_on', 'created_by',
'is_processing'
)
def __init__(self, *args, **kwargs):
params = get(kwargs, 'context.request.query_params')
self.include_summary = False
if params:
self.query_params = params.dict()
self.include_summary = self.query_params.get(INCLUDE_SUMMARY) in ['true', True]
try:
if not self.include_summary:
self.fields.pop('summary', None)
except: # pylint: disable=bare-except
pass
super().__init__(*args, **kwargs)
def get_summary(self, obj):
summary = None
if self.include_summary:
summary = ExpansionSummarySerializer(obj).data
return summary
class ReferenceExpressionResolveSerializer(Serializer): # pylint: disable=abstract-method
reference_type = SerializerMethodField()
resolved = SerializerMethodField()
timestamp = SerializerMethodField()
class Meta:
fields = (
'reference_type', 'resolved', 'timestamp'
)
@staticmethod
def get_reference_type(obj):
return 'canonical' if get(obj, 'is_fqdn') else 'relative'
@staticmethod
def get_resolved(obj):
return bool(obj.id)
@staticmethod
def get_timestamp(_):
return datetime.now()