Update Install Instructions + May Other Fixes #179

	name: "CI"
	on:
	pull_request:
	branches:
	- main
	push:
	branches:
	- main

	concurrency:
	group: "${{ github.workflow }}-${{ github.ref }}"
	cancel-in-progress: true

	defaults:
	run:
	shell: bash -leo pipefail {0}

	jobs:
	tests:
	runs-on: ${{ matrix.OS }}-latest
	name: "tests"
	strategy:
	fail-fast: false
	matrix:
	os: ['ubuntu',]
	python-version:
	- 3.9
	- 3.10
	- 3.11
	- 3.12
	include:
	- os: 'macos'
	python-version: 3.12

	steps:
	- uses: actions/checkout@v4
	- uses: mamba-org/setup-micromamba@v1
	with:
	environment-file: environment.yml
	environment-name: kartograf
	cache-environment: true
	cache-downloads: true
	create-args: >-
	python=${{ matrix.python-version }}

	- name: "Install"
	run: pip install --no-deps -e .

	- name: "Test imports"
	run: \|
	# if we add more to this, consider changing to for + env vars
	python -Ic "import kartograf"
	- name: "Environment Information"
	run: \|
	micromamba info -a
	micromamba list
	- name: "Run tests"
	run: \|
	pytest -n auto -v --cov=kartograf --cov-report=xml
	- name: "Test Notebooks"
	run: \|
	# openfe is a dep for the notebooks example, but not the package
	micromambaa install openfe
	pytest --nbval-lax
	- name: codecov
	if: ${{ github.repository == 'OpenFreeEnergy/kartograf' && github.event != 'schedule'}}
	uses: codecov/codecov-action@v3
	with:
	token: ${{ secrets.CODECOV_TOKEN }}
	file: ./coverage.xml
	env_vars: OS,PYTHON
	fail_ci_if_error: True
	verbose: True

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