Opengate_tests error "The data are not correct"

[franky180]

Trying to install opengate on a plain Ubuntu 22.04.3 LTS system I encountered the following error:

(opengate_env) user@ssmptest:~$ opengate_tests
Geant4 data folder does not exist.
I will create it for you here: /home/user/opengate_env/lib/python3.10/site-packages/opengate_core/geant4_data
... and download the G4 data.
This will take a moment.

Downloading 1/12 https://cern.ch/geant4-data/datasets/G4NDL.4.7.tar.gz
100% [....................................................................] 1114928821 / 1114928821Extracting the data archive (tar) ...
done

... (2/12 to 11/12 were downloaded successfully too)...

Downloading 12/12 https://cern.ch/geant4-data/datasets/G4ENSDFSTATE.2.3.tar.gz
100% [............................................................................] 290745 / 290745Extracting the data archive (tar) ...
done

Done
No Opengate test data available in: /home/user/opengate_env/lib/python3.10/site-packages/opengate_core/../opengate/tests/data
I download it for you.

Done
Look for tests in: /home/user/opengate_env/lib/python3.10/site-packages/opengate/tests/../tests/src
The data are not correct in: /home/user/opengate_env/lib/python3.10/site-packages/opengate/tests/../tests/src/../data
Activate LFS and download them with:
git submodule update --init --recursive

I already tried to update the git submodule as suggested by the error message. This leads to the following error message:
fatal: not a git repository (or any of the parent directories): .git
The files in /tests/src/ and in /tests/data/ were successfully downloaded.

Is there anything I can do to fix this issue?

[tbaudier]

How do you install opengate? With: pip install --pre opengate ?

Because this version contains that error. Try to download the latest wheels here (at the bottom, click on dist) :
https://github.com/OpenGATE/opengate/actions/runs/6399870943

The problem will be solved with the next release

[jizhang02]

How do you install opengate? With: pip install --pre opengate ?

Because this version contains that error. Try to download the latest wheels here (at the bottom, click on dist) : https://github.com/OpenGATE/opengate/actions/runs/6399870943

The problem will be solved with the next release

hi, where should I put the 'dist'?
thanks

[tbaudier]

You can unzip the archive. Then go to the dist folder and do:
pip install opengate_core<>.whl
pip install opengate-0.7.3-py3-none-any.whl

Replace the <> by the version of python and os you need

[jizhang02]

The testing does not work for me. It almost drive me crazy.
It's good that you can share your well-installed and tested docker or virtual machine file.
But there is another solution for this problem:
#79 (comment)

[dsarrut]

oh nice ! We will investigate, but we cannot really reproduce this bug, so it is difficult from our side.

For this error:

I already tried to update the git submodule as suggested by the error message. This leads to the following error message: fatal: not a git repository (or any of the parent directories): .git The files in /tests/src/ and in /tests/data/ were successfully downloaded.

I think you were not in the correct folder ("not a git repository"), if you try this while being in the opengate folder, it should not lead to this error.

[tbaudier]

Great, BTW it should be easy with the next release

[franky180]

Try to download the latest wheels here (at the bottom, click on dist) : https://github.com/OpenGATE/opengate/actions/runs/6399870943

Thank you so much for your quick response. I just followed your advice and installed the verison you suggested (opengate-10.0b3-py3-none-any.whl and opengate_core-10.0b3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl for my Python 3.10.12).

I just ran into another error that I cannot make sense of which seems to be occuring in the digitizers.py file. Any ideas how to fix that?

(opengate_env) user@ssmptest:~/opengate_env/lib/python3.10/site-packages/opengate$ opengate_tests
Importing opengate ...
No correct Opengate test data version in: /home/user/opengate_env/lib/python3.10/site-packages/opengate_core/../opengate/tests/data
I update it for you.

Done
Traceback (most recent call last):
  File "/home/user/opengate_env/bin/opengate_tests", line 10, in <module>
    from opengate.exception import fatal, colored, color_ok, color_error
  File "/home/user/opengate_env/lib/python3.10/site-packages/opengate/__init__.py", line 7, in <module>
    from opengate.managers import Simulation
  File "/home/user/opengate_env/lib/python3.10/site-packages/opengate/managers.py", line 9, in <module>
    from .element import new_element
  File "/home/user/opengate_env/lib/python3.10/site-packages/opengate/element.py", line 4, in <module>
    from .actors.actorbuilders import actor_builders, actor_type_names
  File "/home/user/opengate_env/lib/python3.10/site-packages/opengate/actors/__init__.py", line 1, in <module>
    from . import digitizers, doseactors, miscactors, filters
  File "/home/user/opengate_env/lib/python3.10/site-packages/opengate/actors/digitizers.py", line 421, in <module>
    class DigitizerEfficiencyActor(g4.GateDigitizerEfficiencyActor, ActorBase):
AttributeError: module 'opengate_core' has no attribute 'GateDigitizerEfficiencyActor'. Did you mean: 'GateDigitizerBlurringActor'?

Edit: I installed CL#1316 and I don't see this error anymore.

[HyperionCore]

the problem is caused by hash verification error:

1. in your env, for example for mine is "/home/mi/miniconda3/envs/vgate/bin/"

2. open the opengate_tests by text editor

3. looking for this place, just comment it:

//////////////////
# if (
# not readable_hash
# # == "91c3bbac271f75ac6cbeb413d892933f4b3369fa5a747a55004e113b31d1c84c"
# == "969384aa7bbc9b6125136e0edf7835e149d25b920e1885e12e58b846c28a101f"
# ):
# print(
# colored.stylize(
# "The data are not correct in: " + os.path.join(mypath, "..", "data"),
# color_error,
# )
# )
# print("Activate LFS and download them with:")
# print("git submodule update --init --recursive")
# return False
//////////////////

all done, you can run tests now.

but there is another problem, all tests running seems correctly, but why the result is failed ??