OpenGene - Open Source Genetics Toolbox

Gene fusion detection and visualization

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)

Generate consensus reads to reduce sequencing noises

repack Illumina format FASTQ to a smaller binary file (.rfq), which can be further compressed by xz (.rfq.xz)

Query Mutated Reads from a Bam

Pattern Recognition for Cell-free DNA

Detect and visualize target mutations by scanning FastQ files directly

check paired-end FASTQ data integrity

Ultra-fast Multi-threaded FASTQ Demultiplexing

Classify somatic/germline mutations by deep neural networks

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

awesome-bio-datasets

Programming training for bioinformatics and other tasks, with introductions and tutorials.

Slice a text file (like FastQ) to smaller files by lines, with gzip supported

OpenGene, core libraries for NGS data analysis and bioinformatics in julia

A simplified pipeline for ctDNA sequencing data analysis

Detect gene fusion directly from raw fastq files

Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated

Deduplication for cfDNA sequencing data

Liquid biopsy pocket book (in Chinese), written by HaploX engineers.

Quality control with BAM files