OpenGene - Open Source Genetics Toolbox

Open source tools for NGS data analysis

Pinned repositories

  1. fastp

    An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)

    C++ 438 93

  2. MutScan

    Detect and visualize target mutations by scanning FastQ files directly

    C 72 25

  3. GeneFuse

    Gene fusion detection and visualization

    C 32 17

  4. gencore

    Generate consensus reads to reduce sequencing noises and remove duplications

    C++ 28 3

  5. repaq

    repack Illumina format FASTQ to a smaller binary file (.rfq), which can be further compressed by xz (.rfq.xz)

    C 50 7

  6. VisualMSI

    Detect and visualize microsatellite instability(MSI) from NGS data

    C++ 8 2