OpenGene - Open Source Genetics Toolbox
Pinned repositories
Repositories
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fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
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fastv
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
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gencore
Generate consensus reads to reduce sequencing noises and remove duplications
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IRDProc
Process genomic data downloaded from influenza research database for unique k-mer generating
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UniqueKMER
Generate unique KMERs for every contig in a FASTA file
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repaq
A fast lossless FASTQ compressor with ultra-high compression ratio
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AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
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MutScan
Detect and visualize target mutations by scanning FastQ files directly
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VisualMSI
Detect and visualize microsatellite instability(MSI) from NGS data
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pecheck
check paired-end FASTQ data integrity
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defq
Ultra-fast Multi-threaded FASTQ Demultiplexing
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awesome-bio-datasets
awesome-bio-datasets
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slicer
Slice a text file (like FastQ) to smaller files by lines, with gzip supported
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OpenGene.jl
(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
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ctdna-pipeline
A simplified pipeline for ctDNA sequencing data analysis
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FusionDirect.jl
(No maintenance) Detect gene fusion directly from raw fastq files
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SeqMaker.jl
(No maintenance) Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated
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