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OpenGene - Open Source Genetics Toolbox

Open source tools for NGS data analysis

Pinned repositories

  1. An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

    C++ 951 203

  2. Detect and visualize target mutations by scanning FastQ files directly

    C 113 33

  3. Gene fusion detection and visualization

    C 68 47

  4. Generate consensus reads to reduce sequencing noises and remove duplications

    C++ 74 28

  5. A fast lossless FASTQ compressor with ultra-high compression ratio

    C 82 17

  6. An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.

    C++ 68 11