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update due to deprecation in VTK 9.0 #7

update due to deprecation in VTK 9.0

update due to deprecation in VTK 9.0 #7

Workflow file for this run

name: CemrgApp Build & Deploy
on:
release:
types: [published]
jobs:
Variables:
runs-on: ubuntu-latest
outputs:
tag: ${{ steps.vars.outputs.tag }}
sha: ${{ steps.vars.outputs.sha }}
steps:
- name: Prepare variables
id: vars
run: |
echo ::set-output name=tag::${GITHUB_REF#refs/tags/}
echo ::set-output name=sha::${GITHUB_SHA::7}
Variables:

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runs-on: ubuntu-latest
outputs:
tag: ${{ steps.vars.outputs.tag }}
sha: ${{ steps.vars.outputs.sha }}
steps:
- name: Prepare variables
id: vars
run: |
echo ::set-output name=tag::${GITHUB_REF#refs/tags/}
echo ::set-output name=sha::${GITHUB_SHA::7}
Create-Release:
runs-on: ubuntu-latest
needs: [Variables, Build-Linux, Build-Windows, Build-macOS]
steps:
- name: Download packages
uses: actions/download-artifact@v4
with:
pattern: Packages-*
merge-multiple: true
- name: Upload Linux package
uses: actions/upload-release-asset@v1.0.2
env:
GITHUB_TOKEN: ${{ github.token }}
with:
upload_url: ${{ github.event.release.upload_url }}
asset_path: CemrgApp-Linux.zip
asset_name: CemrgApp-Linux-${{ needs.Variables.outputs.tag }}.zip
asset_content_type: application/zip
- name: Upload Windows package
uses: actions/upload-release-asset@v1.0.2
env:
GITHUB_TOKEN: ${{ github.token }}
with:
upload_url: ${{ github.event.release.upload_url }}
asset_path: CemrgApp-Windows.zip
asset_name: CemrgApp-Windows-${{ needs.Variables.outputs.tag }}.zip
asset_content_type: application/zip
- name: Upload macOS package
uses: actions/upload-release-asset@v1.0.2
env:
GITHUB_TOKEN: ${{ github.token }}
with:
upload_url: ${{ github.event.release.upload_url }}
asset_path: CemrgApp-macOS.dmg
asset_name: CemrgApp-macOS-${{ needs.Variables.outputs.tag }}.dmg
asset_content_type: application/octet-stream
Build-Linux:
runs-on: ubuntu-20.04
needs: [Variables]
steps:
- name: Download precompiled Build folder
run: |
wget -q -O Build.zip https://emckclac-my.sharepoint.com/:u:/g/personal/k2143219_kcl_ac_uk/ETN8L5OcVupGiMInP8o9MtUBNflJb57nK1Dg-jnikW0iwg?download=1
7z x Build.zip
rm Build.zip
sudo mv Build /
- name: Download external libraries
run: |
wget -q -O Externals.zip https://emckclac-my.sharepoint.com/:u:/g/personal/k2143219_kcl_ac_uk/EX8zGabE-ctDoBnde6ntHR0Bx_1wYis_ql26aAzMoedMzg?download=1
7z x Externals.zip
rm Externals.zip
sudo mv Externals /
- name: Install missing packages
run: |
sudo apt update
sudo DEBIAN_FRONTEND=noninteractive apt install doxygen graphviz libfreetype6-dev libglu1-mesa-dev libssl-dev libtiff5-dev libwrap0-dev libxcomposite1 libxcursor1 libxi-dev libxkbcommon-x11-0 libxt-dev mesa-common-dev -y
sudo apt remove --auto-remove icu-devtools libicu-dev -y
- name: Install Qt
run: |
sudo pip3 install --upgrade setuptools
sudo pip3 install aqtinstall
sudo aqt install --outputdir /Qt 5.12.10 linux desktop -m qtcharts qtnetworkauth qtpurchasing qtdatavis3d qtscript qtvirtualkeyboard qtwebengine qtwebglplugin
- name: Clone MITK
run: sudo git clone --branch v2022.10 https://phabricator.mitk.org/source/mitk.git /MITK
- name: Change timestamps of the MITK directory
run: sudo find /MITK/ -exec touch -a -m -d 20210401 {} \;
- name: Clone CemrgApp
uses: actions/checkout@v4
with:
path: CemrgApp
- name: Move CemrgApp to root
run: sudo mv CemrgApp /
- name: Update the CemrgApp version
working-directory: /CemrgApp
run: |
sudo rm CemrgApp/Applications/MainApp/version.txt
sudo echo ${{ needs.Variables.outputs.tag }} >> CemrgApp/Applications/MainApp/version.txt
sudo echo ${{ needs.Variables.outputs.sha }} >> CemrgApp/Applications/MainApp/version.txt
- name: Build
working-directory: /Build
run: make -j4
- name: Package
working-directory: /Build/MITK-build
run: |
make package -j4
cd _CPack_Packages/Linux/TGZ
mv MITK-v2022.10-linux-x86_64 CemrgApp-Linux
rm CemrgApp-Linux/Mitk*
rm CemrgApp-Linux/bin/MitkWorkbench*
mv /Externals/* CemrgApp-Linux/bin/
mv /CemrgApp/README.md CemrgApp-Linux/
7z a CemrgApp-Linux.zip CemrgApp-Linux
mv CemrgApp-Linux.zip ${{ github.workspace }}/
- name: Upload package
uses: actions/upload-artifact@v4
with:
name: Packages-Linux
path: CemrgApp-Linux.zip
Build-Windows:
runs-on: windows-2016
needs: [Variables]
steps:
- name: Uninstall NSIS
run: |
& 'C:/Program Files (x86)/NSIS/uninst-nsis.exe' /S
- name: Download precompiled Build folder
working-directory: c:\
run: |
c:\msys64\usr\bin\wget.exe -q -O Build.zip https://emckclac-my.sharepoint.com/:u:/g/personal/k2143219_kcl_ac_uk/EXJ2fam5aCNLvRW8kk1o6jwBzsI50I0iuZ1vfq4oOPRbJQ?download=1
7z x Build.zip
del Build.zip
- name: Download external libraries
working-directory: c:\
run: |
c:\msys64\usr\bin\wget.exe -q -O Externals.zip https://emckclac-my.sharepoint.com/:u:/g/personal/k2143219_kcl_ac_uk/Ea8urj-xMS5CoEnt3lS-A9QBLoAi1EXfP3lM26MRn11OrA?download=1
7z x Externals.zip
del Externals.zip
- name: Install Qt
working-directory: c:\
run: |
pip install aqtinstall
mkdir Qt
python -m aqt install --outputdir Qt 5.12.10 windows desktop win64_msvc2017_64 -m qtcharts qtnetworkauth qtpurchasing qtdatavis3d qtscript qtvirtualkeyboard qtwebengine qtwebglplugin
- name: Clone MITK
run: git clone --branch v2022.10 https://phabricator.mitk.org/source/mitk.git c:\MITK
- name: Change timestamps of the MITK directory
run: dir -R c:\MITK | foreach { $_.LastWriteTime = [DateTime]::ParseExact('01-04-21', 'dd-MM-yy', $null) }
- name: Clone CemrgApp
uses: actions/checkout@v4
with:
path: CemrgApp
- name: Copy CemrgApp to root
shell: cmd
run: |
mkdir c:\CemrgApp
xcopy /e .\CemrgApp\* c:\CemrgApp\
rd /s /q CemrgApp
- name: Update the CemrgApp version
working-directory: c:\CemrgApp
shell: powershell
run: |
rm CemrgApp/Applications/MainApp/version.txt
echo ${{ needs.Variables.outputs.tag }} >> CemrgApp/Applications/MainApp/version.txt
echo ${{ needs.Variables.outputs.sha }} >> CemrgApp/Applications/MainApp/version.txt
- name: Add MSBuild to PATH
uses: microsoft/setup-msbuild@v1.0.2
- name: Build
working-directory: c:\Build
run: MSBuild MITK-superbuild.sln /p:Configuration=Release /p:Platform=x64 -m:4
- name: Package
working-directory: c:\Build\MITK-build
run: |
MSBuild PACKAGE.vcxproj /p:Configuration=Release /p:Platform=x64 -m:4
cd _CPack_Packages\win64\ZIP
ren MITK-v2022.10-windows-x86_64 CemrgApp-Windows
xcopy /e c:\Externals\* .\CemrgApp-Windows\bin\
copy c:\CemrgApp\README.md .\CemrgApp-Windows\
del CemrgApp-Windows\Mitk*
del CemrgApp-Windows\bin\MitkWorkbench.*
7z a CemrgApp-Windows.zip CemrgApp-Windows
move CemrgApp-Windows.zip ${{ github.workspace }}\
- name: Upload package
uses: actions/upload-artifact@v4
with:
name: Packages-Windows
path: CemrgApp-Windows.zip
Build-macOS:
runs-on: macos-12
needs: [Variables]
steps:
- name: Download precompiled Build folder
working-directory: /Users/Shared
run: |
wget -q -O Build.zip https://emckclac-my.sharepoint.com/:u:/g/personal/k2143219_kcl_ac_uk/EX4dERE2ilFNmuv2Od0GaOoBuUSgzBS_TzwEqf9KVtmsXQ?download=1
7z x Build.zip
rm Build.zip
- name: Download external libraries
working-directory: /Users/Shared
run: |
wget -q -O Externals.zip https://emckclac-my.sharepoint.com/:u:/g/personal/k2143219_kcl_ac_uk/EZh5YUHzdyNEu_m0ZwTfaYUBZBil9eIqLrmJw8lDWQSLag?download=1
7z x Externals.zip
rm Externals.zip
- name: Install missing packages
run: brew install doxygen libomp
- name: Install Qt
working-directory: /Users/Shared
run: |
pip3 install aqtinstall --user
mkdir Qt
python3 -m aqt install --outputdir Qt 5.12.10 mac desktop -m qtcharts qtnetworkauth qtpurchasing qtdatavis3d qtscript qtvirtualkeyboard qtwebengine qtwebglplugin
- name: Clone MITK
run: git clone --branch v2022.10 https://phabricator.mitk.org/source/mitk.git /Users/Shared/MITK
- name: Change timestamps of the MITK directory
run: find /Users/Shared/MITK/ -exec touch -a -m -t 202104010000 {} \;
- name: Clone CemrgApp
uses: actions/checkout@v4
with:
path: CemrgApp
- name: Move CemrgApp
run: mv CemrgApp /Users/Shared/
- name: Update the CemrgApp version
working-directory: /Users/Shared/CemrgApp
run: |
sudo rm CemrgApp/Applications/MainApp/version.txt
sudo echo ${{ needs.Variables.outputs.tag }} >> CemrgApp/Applications/MainApp/version.txt
sudo echo ${{ needs.Variables.outputs.sha }} >> CemrgApp/Applications/MainApp/version.txt
- name: Build
working-directory: /Users/Shared/Build
run: |
cmake -DCMAKE_PREFIX_PATH=/Users/Shared/Qt/5.12.10/clang_64 -DMITK_EXTENSION_DIRS=/Users/Shared/CemrgApp/CemrgApp -DMITK_BUILD_ALL_PLUGINS=OFF -DBUILD_TESTING=OFF -DCMAKE_BUILD_TYPE="Release" ../MITK
make -j6
- name: Package
working-directory: /Users/Shared/Build/MITK-build
continue-on-error: true
run: make package -j6
- name: Create DMG
working-directory: /Users/Shared/Build/MITK-build/_CPack_Packages/Darwin/DragNDrop/MITK-v2022.10-macos-x86_64
run: |
rsync -au MitkWorkbench.app/Contents/Frameworks/ CemrgApp.app/Contents/Frameworks
rsync -au MitkWorkbench.app/Contents/MacOS/ CemrgApp.app/Contents/MacOS
cp -R /Users/Shared/Externals/ CemrgApp.app/Contents/MacOS
rm CemrgApp.app/Contents/MacOS/MitkWorkbench*
mkdir /Users/Shared/CemrgApp-macOS
mv CemrgApp.app /Users/Shared/CemrgApp-macOS
mv /Users/Shared/CemrgApp/README.md /Users/Shared/CemrgApp-macOS
ln -s /Applications/ /Users/Shared/CemrgApp-macOS/Applications
hdiutil create -volname CemrgApp -srcfolder /Users/Shared/CemrgApp-macOS -ov -format UDZO ${{ github.workspace }}/CemrgApp-macOS.dmg
- name: Upload package
uses: actions/upload-artifact@v4
with:
name: Packages-macOS
path: CemrgApp-macOS.dmg