Update several plugin versions

[cherylking]

Related to #1691

Not a fix, but updating some of the versions of maven plugins we are using that are flagged as warnings with -Dmaven.plugin.validation=VERBOSE parameter set.

[cherylking]

@mattbsox You will see most of the changes are just a version update, but please pay attention to the two test cases I had to modify. The loose app xml file added file entries for the manifest file instead of dir entries for the META-INF folder. It seems like the skinnyWars setting used to cause the dir entry to happen, but with the update in the maven-ear-plugin version the manifest file is no longer getting created in the temp dir? So we create one in the tmp dir instead and reference it as a file. I don't know if this is an issue/problem.

This is the code in LooseEarApplication I am talking about:

It's going in the last else now, but used to go in the first and second if.

[mattbsox]

Sorry, missed the comment you made. I think the LGP implementation is always pointing to an existing manifest file, or the file is created in the temp dir if it is null/doesn't exist when passed to the loose app method. I think the change should be okay here too.