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Remove the need for most locking in memory.c. #1618

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merged 1 commit into from
Jun 14, 2018

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oon3m0oo
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@oon3m0oo oon3m0oo commented Jun 14, 2018

Using thread local storage for tracking memory allocations means that threads
no longer have to lock at all when doing memory allocations / frees. This
particularly helps the gemm driver since it does an allocation per invocation.
Even without threading at all, this helps, since even calling a lock with
no contention has a cost:

Before this change, no threading:

----------------------------------------------------
Benchmark             Time           CPU Iterations
----------------------------------------------------
BM_SGEMM/4          102 ns        102 ns   13504412
BM_SGEMM/6          175 ns        175 ns    7997580
BM_SGEMM/8          205 ns        205 ns    6842073
BM_SGEMM/10         266 ns        266 ns    5294919
BM_SGEMM/16         478 ns        478 ns    2963441
BM_SGEMM/20         690 ns        690 ns    2144755
BM_SGEMM/32        1906 ns       1906 ns     716981
BM_SGEMM/40        2983 ns       2983 ns     473218
BM_SGEMM/64        9421 ns       9422 ns     148450
BM_SGEMM/72       12630 ns      12631 ns     112105
BM_SGEMM/80       15845 ns      15846 ns      89118
BM_SGEMM/90       25675 ns      25676 ns      54332
BM_SGEMM/100      29864 ns      29865 ns      47120
BM_SGEMM/112      37841 ns      37842 ns      36717
BM_SGEMM/128      56531 ns      56532 ns      25361
BM_SGEMM/140      75886 ns      75888 ns      18143
BM_SGEMM/150      98493 ns      98496 ns      14299
BM_SGEMM/160     102620 ns     102622 ns      13381
BM_SGEMM/170     135169 ns     135173 ns      10231
BM_SGEMM/180     146170 ns     146172 ns       9535
BM_SGEMM/189     190226 ns     190231 ns       7397
BM_SGEMM/200     194513 ns     194519 ns       7210
BM_SGEMM/256     396561 ns     396573 ns       3531

with this change:

----------------------------------------------------
Benchmark             Time           CPU Iterations
----------------------------------------------------
BM_SGEMM/4           95 ns         95 ns   14500387
BM_SGEMM/6          166 ns        166 ns    8381763
BM_SGEMM/8          196 ns        196 ns    7277044
BM_SGEMM/10         256 ns        256 ns    5515721
BM_SGEMM/16         463 ns        463 ns    3025197
BM_SGEMM/20         636 ns        636 ns    2070213
BM_SGEMM/32        1885 ns       1885 ns     739444
BM_SGEMM/40        2969 ns       2969 ns     472152
BM_SGEMM/64        9371 ns       9372 ns     148932
BM_SGEMM/72       12431 ns      12431 ns     112919
BM_SGEMM/80       15615 ns      15616 ns      89978
BM_SGEMM/90       25397 ns      25398 ns      55041
BM_SGEMM/100      29445 ns      29446 ns      47540
BM_SGEMM/112      37530 ns      37531 ns      37286
BM_SGEMM/128      55373 ns      55375 ns      25277
BM_SGEMM/140      76241 ns      76241 ns      18259
BM_SGEMM/150     102196 ns     102200 ns      13736
BM_SGEMM/160     101521 ns     101525 ns      13556
BM_SGEMM/170     136182 ns     136184 ns      10567
BM_SGEMM/180     146861 ns     146864 ns       9035
BM_SGEMM/189     192632 ns     192632 ns       7231
BM_SGEMM/200     198547 ns     198555 ns       6995
BM_SGEMM/256     392316 ns     392330 ns       3539

Before, when built with USE_THREAD=1, GEMM_MULTITHREAD_THRESHOLD = 4, the cost
of small matrix operations was overshadowed by thread locking (look smaller than
32) even when not explicitly spawning threads. Note that even when threading was disabled there was still a lock per allocation to check memory_initialized (a 32-bit value used as a boolean flag):

----------------------------------------------------
Benchmark             Time           CPU Iterations
----------------------------------------------------
BM_SGEMM/4          328 ns        328 ns    4170562
BM_SGEMM/6          396 ns        396 ns    3536400
BM_SGEMM/8          418 ns        418 ns    3330102
BM_SGEMM/10         491 ns        491 ns    2863047
BM_SGEMM/16         710 ns        710 ns    2028314
BM_SGEMM/20         871 ns        871 ns    1581546
BM_SGEMM/32        2132 ns       2132 ns     657089
BM_SGEMM/40        3197 ns       3196 ns     437969
BM_SGEMM/64        9645 ns       9645 ns     144987
BM_SGEMM/72       35064 ns      32881 ns      50264
BM_SGEMM/80       37661 ns      35787 ns      42080
BM_SGEMM/90       36507 ns      36077 ns      40091
BM_SGEMM/100      32513 ns      31850 ns      48607
BM_SGEMM/112      41742 ns      41207 ns      37273
BM_SGEMM/128      67211 ns      65095 ns      21933
BM_SGEMM/140      68263 ns      67943 ns      19245
BM_SGEMM/150     121854 ns     115439 ns      10660
BM_SGEMM/160     116826 ns     115539 ns      10000
BM_SGEMM/170     126566 ns     122798 ns      11960
BM_SGEMM/180     130088 ns     127292 ns      11503
BM_SGEMM/189     120309 ns     116634 ns      13162
BM_SGEMM/200     114559 ns     110993 ns      10000
BM_SGEMM/256     217063 ns     207806 ns       6417

and after, it's gone (note this includes #1612):

----------------------------------------------------
Benchmark             Time           CPU Iterations
----------------------------------------------------
BM_SGEMM/4           95 ns         95 ns   12347650
BM_SGEMM/6          166 ns        166 ns    8259683
BM_SGEMM/8          193 ns        193 ns    7162210
BM_SGEMM/10         258 ns        258 ns    5415657
BM_SGEMM/16         471 ns        471 ns    2981009
BM_SGEMM/20         666 ns        666 ns    2148002
BM_SGEMM/32        1903 ns       1903 ns     738245
BM_SGEMM/40        2969 ns       2969 ns     473239
BM_SGEMM/64        9440 ns       9440 ns     148442
BM_SGEMM/72       37239 ns      33330 ns      46813
BM_SGEMM/80       57350 ns      55949 ns      32251
BM_SGEMM/90       36275 ns      36249 ns      42259
BM_SGEMM/100      31111 ns      31008 ns      45270
BM_SGEMM/112      43782 ns      40912 ns      34749
BM_SGEMM/128      67375 ns      64406 ns      22443
BM_SGEMM/140      76389 ns      67003 ns      21430
BM_SGEMM/150      72952 ns      71830 ns      19793
BM_SGEMM/160      97039 ns      96858 ns      11498
BM_SGEMM/170     123272 ns     122007 ns      11855
BM_SGEMM/180     126828 ns     126505 ns      11567
BM_SGEMM/189     115179 ns     114665 ns      11044
BM_SGEMM/200      89289 ns      87259 ns      16147
BM_SGEMM/256     226252 ns     222677 ns       7375

I've also tested this with ThreadSanitizer and found no data races during
execution. I'm not sure why 200 is always faster than it's neighbors, we must
be hitting some optimal cache size or something.

@oon3m0oo
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oon3m0oo commented Jun 14, 2018

I could use some help here since I'm not sure if very old compilers will support __thread and __builtin_expect, but this works great for relatively recent gcc and clang (and should for windows, but I don't have a windows machine handy).

Relatedly, how far back does OpenBLAS really need to support? For example, would we care about gcc 2.x? Or VC++2008. There are some significant advantages to restricting support to even relatively modern toolchains.

@martin-frbg
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I would draw the line at gcc 4.1 (which came with Red Hat Enterprise Linux 5), which got special treatment for #875. Unfortunately it seems that the Apple version of clang does/did not handle thread_local until XCode 8 or 9. (Which seems to be why two of the travis tests are failing. The third is
a USE_OPENMP=1 build, I am running it locally now to see if it is due to a misplaced ifdef or similar.)

@oon3m0oo
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Given that Apple requires using the latest XCode to release apps to their stores, are we able to assume people will use something recent?

I'll also try an OpenMP build and update the PR if that turns up anything.

@martin-frbg
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USE_OPENMP builds fine, but the automated blas tests crash with
OpenBLAS : Program will terminate because you tried to allocate too many memory regions. BLAS : Bad memory unallocation! : 2 (nil)

@oon3m0oo
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Ahh... I see. I suppose setting 2 buffers per thread is probably too small for the tests. Usually it's num_cpus * 2 * num_threads, but if we have a pool per thread it should be pretty small. Do you think 4 would be enough?

@oon3m0oo
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Ok I can reproduce this locally with my own program. I'll dig a bit deeper.

@oon3m0oo
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It appears that when using OpenMP there is only one allocation thread. I think there's a simple fix.

@oon3m0oo
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oon3m0oo commented Jun 14, 2018

Back on those XCode failures it seems it's not an XCode issue, but a target issue. __thread is supported from OSX 10.7, apparently, while OpenBLAS currently targets 10.6, which is now nearly 9 years old. Is it untenable to increase to 10.7?

Upgrading to a more recent XCode would be nice, but not required.

@martin-frbg
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That's the half-open question from #1580. I*ll do a PR to update the deployment target (10.7 or 10.8 ?)

@oon3m0oo
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I'd certainly be ok with 10.8. I'm ashamed and proud to admit I have a 2012 Macbook Pro laptop at home and it's running just fine on 10.13. Apple has a pretty good track record of supporting old non-phone hardware:
https://support.apple.com/kb/SP765?locale=en_US

Using thread local storage for tracking memory allocations means that threads
no longer have to lock at all when doing memory allocations / frees. This
particularly helps the gemm driver since it does an allocation per invocation.
Even without threading at all, this helps, since even calling a lock with
no contention has a cost:

Before this change, no threading:
```
----------------------------------------------------
Benchmark             Time           CPU Iterations
----------------------------------------------------
BM_SGEMM/4          102 ns        102 ns   13504412
BM_SGEMM/6          175 ns        175 ns    7997580
BM_SGEMM/8          205 ns        205 ns    6842073
BM_SGEMM/10         266 ns        266 ns    5294919
BM_SGEMM/16         478 ns        478 ns    2963441
BM_SGEMM/20         690 ns        690 ns    2144755
BM_SGEMM/32        1906 ns       1906 ns     716981
BM_SGEMM/40        2983 ns       2983 ns     473218
BM_SGEMM/64        9421 ns       9422 ns     148450
BM_SGEMM/72       12630 ns      12631 ns     112105
BM_SGEMM/80       15845 ns      15846 ns      89118
BM_SGEMM/90       25675 ns      25676 ns      54332
BM_SGEMM/100      29864 ns      29865 ns      47120
BM_SGEMM/112      37841 ns      37842 ns      36717
BM_SGEMM/128      56531 ns      56532 ns      25361
BM_SGEMM/140      75886 ns      75888 ns      18143
BM_SGEMM/150      98493 ns      98496 ns      14299
BM_SGEMM/160     102620 ns     102622 ns      13381
BM_SGEMM/170     135169 ns     135173 ns      10231
BM_SGEMM/180     146170 ns     146172 ns       9535
BM_SGEMM/189     190226 ns     190231 ns       7397
BM_SGEMM/200     194513 ns     194519 ns       7210
BM_SGEMM/256     396561 ns     396573 ns       3531
```
with this change:
```
----------------------------------------------------
Benchmark             Time           CPU Iterations
----------------------------------------------------
BM_SGEMM/4           95 ns         95 ns   14500387
BM_SGEMM/6          166 ns        166 ns    8381763
BM_SGEMM/8          196 ns        196 ns    7277044
BM_SGEMM/10         256 ns        256 ns    5515721
BM_SGEMM/16         463 ns        463 ns    3025197
BM_SGEMM/20         636 ns        636 ns    2070213
BM_SGEMM/32        1885 ns       1885 ns     739444
BM_SGEMM/40        2969 ns       2969 ns     472152
BM_SGEMM/64        9371 ns       9372 ns     148932
BM_SGEMM/72       12431 ns      12431 ns     112919
BM_SGEMM/80       15615 ns      15616 ns      89978
BM_SGEMM/90       25397 ns      25398 ns      55041
BM_SGEMM/100      29445 ns      29446 ns      47540
BM_SGEMM/112      37530 ns      37531 ns      37286
BM_SGEMM/128      55373 ns      55375 ns      25277
BM_SGEMM/140      76241 ns      76241 ns      18259
BM_SGEMM/150     102196 ns     102200 ns      13736
BM_SGEMM/160     101521 ns     101525 ns      13556
BM_SGEMM/170     136182 ns     136184 ns      10567
BM_SGEMM/180     146861 ns     146864 ns       9035
BM_SGEMM/189     192632 ns     192632 ns       7231
BM_SGEMM/200     198547 ns     198555 ns       6995
BM_SGEMM/256     392316 ns     392330 ns       3539
```

Before, when built with USE_THREAD=1, GEMM_MULTITHREAD_THRESHOLD = 4, the cost
of small matrix operations was overshadowed by thread locking (look smaller than
32) even when not explicitly spawning threads:
```
----------------------------------------------------
Benchmark             Time           CPU Iterations
----------------------------------------------------
BM_SGEMM/4          328 ns        328 ns    4170562
BM_SGEMM/6          396 ns        396 ns    3536400
BM_SGEMM/8          418 ns        418 ns    3330102
BM_SGEMM/10         491 ns        491 ns    2863047
BM_SGEMM/16         710 ns        710 ns    2028314
BM_SGEMM/20         871 ns        871 ns    1581546
BM_SGEMM/32        2132 ns       2132 ns     657089
BM_SGEMM/40        3197 ns       3196 ns     437969
BM_SGEMM/64        9645 ns       9645 ns     144987
BM_SGEMM/72       35064 ns      32881 ns      50264
BM_SGEMM/80       37661 ns      35787 ns      42080
BM_SGEMM/90       36507 ns      36077 ns      40091
BM_SGEMM/100      32513 ns      31850 ns      48607
BM_SGEMM/112      41742 ns      41207 ns      37273
BM_SGEMM/128      67211 ns      65095 ns      21933
BM_SGEMM/140      68263 ns      67943 ns      19245
BM_SGEMM/150     121854 ns     115439 ns      10660
BM_SGEMM/160     116826 ns     115539 ns      10000
BM_SGEMM/170     126566 ns     122798 ns      11960
BM_SGEMM/180     130088 ns     127292 ns      11503
BM_SGEMM/189     120309 ns     116634 ns      13162
BM_SGEMM/200     114559 ns     110993 ns      10000
BM_SGEMM/256     217063 ns     207806 ns       6417
```
and after, it's gone (note this includes my other change which reduces calls
to num_cpu_avail):
```
----------------------------------------------------
Benchmark             Time           CPU Iterations
----------------------------------------------------
BM_SGEMM/4           95 ns         95 ns   12347650
BM_SGEMM/6          166 ns        166 ns    8259683
BM_SGEMM/8          193 ns        193 ns    7162210
BM_SGEMM/10         258 ns        258 ns    5415657
BM_SGEMM/16         471 ns        471 ns    2981009
BM_SGEMM/20         666 ns        666 ns    2148002
BM_SGEMM/32        1903 ns       1903 ns     738245
BM_SGEMM/40        2969 ns       2969 ns     473239
BM_SGEMM/64        9440 ns       9440 ns     148442
BM_SGEMM/72       37239 ns      33330 ns      46813
BM_SGEMM/80       57350 ns      55949 ns      32251
BM_SGEMM/90       36275 ns      36249 ns      42259
BM_SGEMM/100      31111 ns      31008 ns      45270
BM_SGEMM/112      43782 ns      40912 ns      34749
BM_SGEMM/128      67375 ns      64406 ns      22443
BM_SGEMM/140      76389 ns      67003 ns      21430
BM_SGEMM/150      72952 ns      71830 ns      19793
BM_SGEMM/160      97039 ns      96858 ns      11498
BM_SGEMM/170     123272 ns     122007 ns      11855
BM_SGEMM/180     126828 ns     126505 ns      11567
BM_SGEMM/189     115179 ns     114665 ns      11044
BM_SGEMM/200      89289 ns      87259 ns      16147
BM_SGEMM/256     226252 ns     222677 ns       7375
```

I've also tested this with ThreadSanitizer and found no data races during
execution.  I'm not sure why 200 is always faster than it's neighbors, we must
be hitting some optimal cache size or something.
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