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Improve OMEdit instance API performance (#10743)
- Return expressions, annotations and other things by reference/pointer rather than by value where possible, to avoid excessive copying of Expression:s. - Only create Annotation:s for elements that actually have annotations, and instead return a predefined default annotation from the corresponding `getAnnotation` methods for elements that don't have an annotation. - Move the common parts of the JSON deserialization for Element:s to `Element::deserialize` and call a virtual method for the rest, to reduce code duplication and avoid having derived classes worry about allocating the annotation when needed.
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