The source code of OpenMS, PyProphet and msproteomicstools is provided on GitHub under the 3-clause BSD license. Please refer to the individual repositories for information regarding obtaining, compiling and installing the components.
OpenSWATH is fully integrated within OpenMS. Please obtain the latest version of OpenMS from GitHub.
Instructions for compilation and installation can be obtained from the OpenMS documentation.
Please obtain the latest version of PyProphet from GitHub.
The instructions for the installation of the PyProphet :doc:`binaries` is applicable here as well.
Please obtain the latest version of msproteomicstools from GitHub.
The instructions for the installation of the msproteomicstools :doc:`binaries` is applicable here as well.
Please obtain the latest version of diapysef from GitHub.
The instructions for compilation and installation of diapysef :doc:`binaries` is applicable here as well.