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Predicting Sites of Metabolism #471

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drc007 opened this issue Nov 30, 2016 · 2 comments
Closed

Predicting Sites of Metabolism #471

drc007 opened this issue Nov 30, 2016 · 2 comments

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@drc007
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drc007 commented Nov 30, 2016

There is a recent publication http://jcheminf.springeropen.com/articles/10.1186/s13321-016-0183-x describing a new tool for predicting sites of metabolism. I thought I'd flag it since the service is accessible via a website, http://www.way2drug.com/RA/

Simply copy and paste the SMILES string from the Google doc (https://docs.google.com/spreadsheets/d/1Rvy6OiM291d1GN_cyT6eSw_C3lSuJ1jaR7AJa8hgGsc/edit#gid=510297618) or use the structure editor to draw novel molecules. Click on the reaction types (e.g. N-oxidation) to see the potential hot spots in the molecule. As with many of these tools I suspect there is a tendency to "over predict", so whilst sites are predicted to be potential sites of metabolism, in reality many will not be significant.

metabprediction

@MFernflower
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MFernflower commented Nov 30, 2016

@drc007 @mattodd There is also a service called xenosite

swami.wustl.edu/xenosite

@drc007 drc007 closed this as completed Dec 8, 2016
@mattodd
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mattodd commented Dec 12, 2016

Link installed in wiki to prevent orphaning of this Issue.

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