[Build issue]: Environment variables pointing to the wrong directory #12
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Contact DetailsWhat was the issue?Hi, TOPAS categoryGeometry Version4.0 What Operative System (OS) are you running on?Linux Relevant log outputrtlab@rtlab-MS-7A62:~/Applications/GDCM/gdcm-build$ cd ..
rtlab@rtlab-MS-7A62:~/Applications/GDCM$ cd ..
rtlab@rtlab-MS-7A62:~/Applications$ cd TOPAS/
rtlab@rtlab-MS-7A62:~/Applications/TOPAS$ rm -rf OpenTOPAS-install OpenTOPAS-build
mkdir OpenTOPAS-{build,install}
cd OpenTOPAS-build
export Geant4_DIR=/Applications/GEANT4/geant4-install
export GDCM_DIR=/Applications/GDCM/gdcm-install
cmake ../OpenTOPAS -DCMAKE_INSTALL_PREFIX=../OpenTOPAS-install
sudo make -j20 install
-- The C compiler identification is GNU 11.4.0
-- The CXX compiler identification is GNU 11.4.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- CMAKE_CXX_COMPILER_ID: GNU
-- CMAKE_CXX_COMPILER_VERSION: 11.4.0
CMake Warning at cmake/Modules/TOPAS_Options.cmake:9 (message):
Setting CMAKE_BUILD_TYPE=Release
Call Stack (most recent call first):
CMakeLists.txt:21 (include)
-- Found EXPAT: /usr/lib/x86_64-linux-gnu/libexpat.so (found suitable version "2.4.7", minimum required is "2.4.7")
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Found X11: /usr/include
-- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so
-- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so - found
-- Looking for gethostbyname
-- Looking for gethostbyname - found
-- Looking for connect
-- Looking for connect - found
-- Looking for remove
-- Looking for remove - found
-- Looking for shmat
-- Looking for shmat - found
-- Looking for IceConnectionNumber in ICE
-- Looking for IceConnectionNumber in ICE - found
-- Found OpenGL: /usr/lib/x86_64-linux-gnu/libOpenGL.so
-- Found Geant4: /home/rtlab/Applications/GEANT4/geant4-install/lib/cmake/Geant4/Geant4Config.cmake (found version "11.1.3")
-- Found Geant4 v11.1 (patch 3)
CMake Error at cmake/Modules/TOPAS_FindPackages.cmake:40 (find_package):
By not providing "FindGDCM.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "GDCM", but
CMake did not find one.
Could not find a package configuration file provided by "GDCM" with any of
the following names:
GDCMConfig.cmake
gdcm-config.cmake
Add the installation prefix of "GDCM" to CMAKE_PREFIX_PATH or set
"GDCM_DIR" to a directory containing one of the above files. If "GDCM"
provides a separate development package or SDK, be sure it has been
installed.
Call Stack (most recent call first):
CMakeLists.txt:22 (include)
-- Configuring incomplete, errors occurred!
See also "/home/rtlab/Applications/TOPAS/OpenTOPAS-build/CMakeFiles/CMakeOutput.log".
make: *** No rule to make target 'install'. Stop.
rtlab@rtlab-MS-7A62:~/Applications/TOPAS/OpenTOPAS-build$Code of Conduct
Attestation
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Replies: 4 comments 13 replies
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Hello Kaamir,
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i follow step 8.1a, 8.2. and 8.3, and checked GDCM dir, I think after Step:8.4, cmake ../OpenTOPAS -DCMAKE_INSTALL_PREFIX=../OpenTOPAS-install ##################################### Termial log ########################################## Update the VERSION argument value or use a ... suffix to tell CMake Deprecation Warning at CMakeLists.txt:3 (cmake_policy): The cmake-policies(7) manual explains that the OLD behaviors of all CMake Deprecation Warning at CMakeLists.txt:9 (cmake_policy): The cmake-policies(7) manual explains that the OLD behaviors of all -- The C compiler identification is GNU 11.4.0 Update the VERSION argument value or use a ... suffix to tell -- Looking for stddef.h Update the VERSION argument value or use a ... suffix to tell -- Looking for string.h Update the VERSION argument value or use a ... suffix to tell CMake Deprecation Warning at Utilities/gdcmopenjpeg-v1/CMakeLists.txt:12 (cmake_policy): The cmake-policies(7) manual explains that the OLD behaviors of all -- Looking for sys/types.h For compatibility with older versions of CMake, option is clearing the -- Looking for strings.h Update the VERSION argument value or use a ... suffix to tell CMake Deprecation Warning at Utilities/gdcmzlib/CMakeLists.txt:1 (cmake_minimum_required): Update the VERSION argument value or use a ... suffix to tell CMake Deprecation Warning at Utilities/gdcmuuid/CMakeLists.txt:1 (cmake_minimum_required): Update the VERSION argument value or use a ... suffix to tell -- Looking for 4 include files stdlib.h, ..., sys/ioctl.h Update the VERSION argument value or use a ... suffix to tell CMake Deprecation Warning at Utilities/socketxx/CMakeLists.txt:3 (cmake_policy): The cmake-policies(7) manual explains that the OLD behaviors of all -- Looking for strsignal CMake Error at cmake/Modules/TOPAS_FindPackages.cmake:9 (find_package): Could not find a package configuration file provided by "Geant4" with any Add the installation prefix of "Geant4" to CMAKE_PREFIX_PATH or set -- Configuring incomplete, errors occurred! |
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i take it back, i checked GDCM, its still thr |
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rtlab@rtlab-MS-7A62: |
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Hi there, it looks like now is Geant4 instead of GDCM, which is not found. If you open a new terminal, then you have to set the variables GDCM_DIR and Geant4_DIR accordingly before run the cmake command. Would you try: cd /Applications/TOPAS/OpenTOPAS-build |
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Thank you, @JoseRamosMendez and @JNaokiDKondo, problem solved. |
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Dear All, STEP 8.4: cd ~/Applications/TOPAS
rm -rf OpenTOPAS-install OpenTOPAS-build
mkdir OpenTOPAS-{build,install}
cd OpenTOPAS-build
export Geant4_DIR=~/Applications/GEANT4/geant4-install
export GDCM_DIR=~/Applications/GDCM/gdcm-install
cmake ../OpenTOPAS -DCMAKE_INSTALL_PREFIX=../OpenTOPAS-install
sudo make -j20 installSTEP 9.1.a export QT_QPA_PLATFORM_PLUGIN_PATH=~/Applications/TOPAS/OpenTOPAS-install/Frameworks
export TOPAS_G4_DATA_DIR=~/Applications/GEANT4/G4DATA
export LD_LIBRARY_PATH=~/Applications/TOPAS/OpenTOPAS-install/lib:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH=~/Applications/GEANT4/geant4-install/lib:$LD_LIBRARY_PATHSTEP 9.1.b mkdir ~/shellScriptss
cd ~/shellScripts
touch topas
echo 'export QT_QPA_PLATFORM_PLUGIN_PATH=~/Applications/TOPAS/OpenTOPAS-install/Frameworks' >> topas
echo 'export TOPAS_G4_DATA_DIR=~/Applications/GEANT4/G4DATA' >> topas
echo 'export LD_LIBRARY_PATH=~/Applications/TOPAS/OpenTOPAS-install/lib:$LD_LIBRARY_PATH' >> topas
echo 'export LD_LIBRARY_PATH=~/Applications/GEANT4/geant4-install/lib:$LD_LIBRARY_PATH' >> topas
echo '~/Applications/TOPAS/OpenTOPAS-install/bin/topas $1' >> topas
chmod +x topaswith best regards |
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We made changes to the user guide following the discussion. |
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Hi guys, set the environment like this: and then I run : sudo cmake ../OpenTOPAS -DCMAKE_INSTALL_PREFIX=../OpenTOPAS-install it gives the same error as above -- CMAKE_CXX_COMPILER_ID: GNU CMake Error at cmake/Modules/TOPAS_FindPackages.cmake:9 (find_package): Could not find a package configuration file provided by "Geant4" with any Add the installation prefix of "Geant4" to CMAKE_PREFIX_PATH or set -- Configuring incomplete, errors occurred! I am pretty sure the path for the Geant4 and gdcm is right ... can anyone help me with it? Thanks |
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Would you mind to list the full address of such directories and their content: $ ls /home/shahin/Applications/GEANT4/geant4-install/. |
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Thanks I saw the update inside geant4-install there are: Bin Inside gdcm-install: |
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Hello Shahin, That way some of our windows experts might be able to better help you with your specific issue. Thanks, |
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yes Thank you |
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Dear All,
I also had this problem. I wonder if it would better to update the Installation instruction guide for Linux (Ubuntu)
using "~/Applications" rather than "/Applications" in Step 8.4 and Step 9.1. The follwing worked for me:
STEP 8.4:
STEP 9.1.a