This directory contains examples of usage of peyotl which are intended to be fairly stereotyped and well documented. See http://opentreeoflife.github.io/peyotl/tutorial/
The top-level examples directory has more scripts that use peyotl (but are a little quirkier and less likely to demonstrate peyotl features in an easy step-by-step manner).
The top-level scripts directory has scripts that are thought to be of
sufficient general interest that they should be installed
when a user runs python setup.py develop or python setup.py install