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For instructions to install and run under linux x86_64 (other systems not supported), please see https://github.com/Oshlack/JAFFA/wiki
Questions and bug reports should be directed to the google group linked to on that page.
If you use JAFFA to analyse your data, please cite our paper, "Nadia M Davidson, Ian J Majewski and Alicia Oshlack, JAFFA: High sensitivity transcriptome-focused fusion gene detection, Genome Medicine 2015, 7:43", http://www.genomemedicine.com/content/7/1/43
Written and maintained by Nadia Davidson, Murdoch Childrens Research Institute, Parkville, Australia.