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New docker full build to get latest RavenPy-0.6.0, Xclim-0.28.0 and latest of everything else #84

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merged 5 commits into from
Jul 26, 2021
Merged

New docker full build to get latest RavenPy-0.6.0, Xclim-0.28.0 and latest of everything else #84

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b766d3c
docker: unpin cftime, SciTools/nc-time-axis/issues/58 resolved
tlvu Jul 13, 2021
526f9b7
docker: add patch to pull unreleased fixes if needed
tlvu Jul 22, 2021
9d04ca3
docker: pin pandas due to xarray
tlvu Jul 22, 2021
fae5b8f
Merge remote-tracking branch 'origin/master' into new-docker-full-build
tlvu Jul 23, 2021
0250863
release: update to use image pavics/workflow-tests:210723
tlvu Jul 23, 2021
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2 changes: 1 addition & 1 deletion Jenkinsfile
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Expand Up @@ -10,7 +10,7 @@ pipeline {
// https://jenkins.io/doc/book/pipeline/syntax/
agent {
docker {
image "pavics/workflow-tests:210527.1-update20210705"
image "pavics/workflow-tests:210723"
label 'linux && docker'
}
}
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2 changes: 1 addition & 1 deletion binder/Dockerfile
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@@ -1,4 +1,4 @@
FROM pavics/workflow-tests:210527.1-update20210705
FROM pavics/workflow-tests:210723

USER root

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2 changes: 1 addition & 1 deletion docker/Dockerfile
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Expand Up @@ -4,7 +4,7 @@ RUN conda update conda

# to checkout other notebooks and to run pip install
RUN apt-get update && \
DEBIAN_FRONTEND=noninteractive apt-get install -y git mercurial gcc unzip fonts-humor-sans && \
DEBIAN_FRONTEND=noninteractive apt-get install -y git mercurial gcc unzip patch fonts-humor-sans && \
apt-get clean

COPY environment.yml /environment.yml
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7 changes: 4 additions & 3 deletions docker/environment.yml
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Expand Up @@ -23,7 +23,9 @@ dependencies:
- rasterio
- gdal # for osgeo
- geopandas
- pandas
# Pin pandas due to xarray
# https://github.com/pydata/xarray/issues/5588#issuecomment-885271773
- pandas==1.2.5
- rioxarray
- scikit-image
- ipyleaflet
Expand All @@ -44,8 +46,7 @@ dependencies:
# pinning hvplot did not solve the problem with violin plot.
- hvplot
- nc-time-axis
# Pin cftime because of https://github.com/SciTools/nc-time-axis/issues/58
- cftime==1.4.1
- cftime
- statsmodels # for ravenpy
# for error 'ImportError: HTTPFileSystem requires "requests" and "aiohttp" to
# be installed' with call 'fsspec.filesystem('https')'
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2 changes: 1 addition & 1 deletion launchcontainer
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@@ -1,7 +1,7 @@
#!/bin/sh -x

if [ -z "$DOCKER_IMAGE" ]; then
DOCKER_IMAGE="pavics/workflow-tests:210527.1-update20210705"
DOCKER_IMAGE="pavics/workflow-tests:210723"
fi

if [ -z "$CONTAINER_NAME" ]; then
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2 changes: 1 addition & 1 deletion launchnotebook
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Expand Up @@ -7,7 +7,7 @@ if [ -z "$PORT" ]; then
fi

if [ -z "$DOCKER_IMAGE" ]; then
DOCKER_IMAGE="pavics/workflow-tests:210527.1-update20210705"
DOCKER_IMAGE="pavics/workflow-tests:210723"
fi

if [ -z "$CONTAINER_NAME" ]; then
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