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Notebook output fixes for Jenkins (#285)
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For the following failures, matching new Jupyter build in this PR
Ouranosinc/PAVICS-e2e-workflow-tests#118:

```
  ______ pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb::Cell 1 _______
  Notebook cell execution failed
  Cell 1: Cell outputs differ

  Input:
  wms = WebMapService("https://neo.gsfc.nasa.gov/wms/wms")
  print("Title: ", wms.identification.title)
  print("Type: ", wms.identification.type)
  print("Operations: ", [op.name for op in wms.operations])
  print("GetMap options: ", wms.getOperationByName("GetMap").formatOptions)
  wms.contents.keys()

  Traceback:
   mismatch 'text/plain'

   assert reference_output == test_output failed:

    "odict_keys([...2_D_SKY_WV'])" == "odict_keys([...2_D_SKY_WV'])"
    Skipping 1250 identical leading characters in diff, use -v to show
    - ', 'MOD17A3H_Y_NPP', 'CERES_NETFLUX_M', 'CERES_NETFLUX_E', 'CERES_NETFLUX_D', 'AURA_NO2_M', 'AURA_NO2_E', 'AURA_NO2_D', 'CERES_LWFLUX_M', 'CERES_LWFLUX_E', 'CERES_LWFLUX_D', 'AURA_OZONE_M', 'AURA_OZONE_E', 'AURA_OZONE_D', 'PermafrostNSIDC', 'SEDAC_POP', 'GPM_3IMERGM', 'TRMM_3B43M', 'GPM_3IMERGDL', 'TRMM_3B43D', 'CERES_SWFLUX_M', 'CERES_SWFLUX_E', 'CERES_SWFLUX_D', 'SCSIE_W', 'NISE_D', 'AQUARIUS_SSS_M', 'AQUARIUS_SSS_W', 'AVHRR_SST_M', 'AVHRR_SST_E', 'MYD28M', 'MYD28W', 'MWOI_SST_M', 'MWOI_SST_W', 'MWOI_SST_D', 'AMSRE_SSTAn_M', 'AMSRE_SSTAn_W', 'AMSRE_SSTAn_D', 'MOD10C1_M_SNOW', 'MOD10C1_E_SNOW', 'MOD10C1_D_SNOW', 'SWE_M', 'CERES_INSOL_M', 'CERES_INSOL_E', 'CERES_INSOL_D', 'SRTM_RAMP2_TOPO', 'MOD_143D_RR', 'MYD_143D_RR', 'VIIRS_543D', 'AURA_UVI_CLIM_M', 'MOD_NDVI_M', 'MOD_NDVI_16', 'GRACE_LWE_M', 'MODAL2_M_SKY_WV', 'MYDAL2_M_SKY_WV', 'MODAL2_E_SKY_WV', 'MYDAL2_E_SKY_WV', 'MODAL2_D_SKY_WV', 'MYDAL2_D_SKY_WV'])
    ?           ^^^^^^  ^^
    + ', 'MOD17A2_M_PSN', 'MOD17A2_E_PSN', 'CERES_NETFLUX_M', 'CERES_NETFLUX_E', 'CERES_NETFLUX_D', 'AURA_NO2_M', 'AURA_NO2_E', 'AURA_NO2_D', 'CERES_LWFLUX_M', 'CERES_LWFLUX_E', 'CERES_LWFLUX_D', 'AURA_OZONE_M', 'AURA_OZONE_E', 'AURA_OZONE_D', 'PermafrostNSIDC', 'SEDAC_POP', 'GPM_3IMERGM', 'TRMM_3B43M', 'GPM_3IMERGDL', 'TRMM_3B43D', 'CERES_SWFLUX_M', 'CERES_SWFLUX_E', 'CERES_SWFLUX_D', 'SCSIE_W', 'NISE_D', 'AQUARIUS_SSS_M', 'AQUARIUS_SSS_W', 'AVHRR_SST_M', 'AVHRR_SST_E', 'MYD28M', 'MYD28W', 'MWOI_SST_M', 'MWOI_SST_W', 'MWOI_SST_D', 'AMSRE_SSTAn_M', 'AMSRE_SSTAn_W', 'AMSRE_SSTAn_D', 'MOD10C1_M_SNOW', 'MOD10C1_E_SNOW', 'MOD10C1_D_SNOW', 'SWE_M', 'CERES_INSOL_M', 'CERES_INSOL_E', 'CERES_INSOL_D', 'SRTM_RAMP2_TOPO', 'MOD_143D_RR', 'MYD_143D_RR', 'VIIRS_543D', 'AURA_UVI_CLIM_M', 'MOD_NDVI_M', 'MOD_NDVI_16', 'GRACE_LWE_M', 'MODAL2_M_SKY_WV', 'MYDAL2_M_SKY_WV', 'MODAL2_E_SKY_WV', 'MYDAL2_E_SKY_WV', 'MODAL2_D_SKY_WV', 'MYDAL2_D_SKY_WV'])
    ?           ^^^^ ++++++++++++++++ ^^^^
```

```
  ___ pavics-sdi-fix-for-jenkins/docs/source/notebooks/esgf-dap.ipynb::Cell 0 ____
  Notebook cell execution failed
  Cell 0: Cell outputs differ

  Input:
  from pyesgf.search import SearchConnection

  # Create a connection for search on ESGF nodes. Note that setting `distrib=True` can lead to weird failures.
  conn = SearchConnection("https://esgf-node.llnl.gov/esg-search/", distrib=False)

  # Launch a search query.
  # Here we're looking for any variable related to humidity within the CMIP6 SSP2-4.5 experiment.
  # Results will be stored in a dictionary with keys defined by the `facets` argument.
  ctx = conn.new_context(
      project="CMIP6",
      experiment_id="ssp245",
      query="humidity",
      facets="variable_id,source_id",
  )

  print("Number of results: ", ctx.hit_count)
  print("Variables related to humidity: ")
  ctx.facet_counts["variable_id"]

  Traceback:
   mismatch 'stdout'

   assert reference_output == test_output failed:

    'Number of re... humidity: \n' == 'Number of re... humidity: \n'
    - Number of results:  10084
    ?                        ^^
    + Number of results:  10072
    ?                        ^^
      Variables related to humidity:

  ___ pavics-sdi-fix-for-jenkins/docs/source/notebooks/esgf-dap.ipynb::Cell 1 ____
  Notebook cell execution failed
  Cell 1: Cell outputs differ

  Input:
  # Now let's look for simulations that have the `hurs` variable and pick the first member.
  ctx.constrain(variable_id="hurs", ensemble="r1i1p1f1")
  ctx.facet_counts["source_id"]

  Traceback:
   mismatch 'text/plain'

   assert reference_output == test_output failed:

    "{'UKESM1-0-L...ESS-CM2': 57}" == "{'UKESM1-0-L...ESS-CM2': 57}"
    Skipping 598 identical leading characters in diff, use -v to show
    Skipping 321 identical trailing characters in diff, use -v to show
    - Earth3': 817,
    ?           ^^
    + Earth3': 805,
    ?           ^^
       'E3SM-
```
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@tlvu
tlvu committed Apr 5, 2023
2 parents 719a740 + 7e2f7f1 commit 5be52fe
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8 changes: 4 additions & 4 deletions docs/source/notebooks/WMS_example.ipynb
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Expand Up @@ -50,7 +50,7 @@
{
"data": {
"text/plain": [
"odict_keys(['MOD14A1_M_FIRE', 'MOD14A1_E_FIRE', 'MOD14A1_D_FIRE', 'MODAL2_M_AER_OD', 'MYDAL2_M_AER_OD', 'MODAL2_E_AER_OD', 'MYDAL2_E_AER_OD', 'MODAL2_D_AER_OD', 'MYDAL2_D_AER_OD', 'MODAL2_M_AER_RA', 'MYDAL2_M_AER_RA', 'MODAL2_E_AER_RA', 'MYDAL2_E_AER_RA', 'MODAL2_D_AER_RA', 'MYDAL2_D_AER_RA', 'MCD43C3_M_BSA', 'MCD43C3_E_BSA', 'MOD_LSTD_CLIM_M', 'MOD_LSTD_CLIM_E', 'MOD_LSTN_CLIM_M', 'MOD_LSTN_CLIM_E', 'AVHRR_CLIM_M', 'AVHRR_CLIM_W', 'GEBCO_BATHY', 'BlueMarbleNG', 'BlueMarbleNG-TB', 'MOP_CO_M', 'MY1DMM_CHLORA', 'MY1DMW_CHLORA', 'MODAL2_M_CLD_FR', 'MYDAL2_M_CLD_FR', 'MODAL2_E_CLD_FR', 'MYDAL2_E_CLD_FR', 'MODAL2_D_CLD_FR', 'MYDAL2_D_CLD_FR', 'MODAL2_M_CLD_OT', 'MYDAL2_M_CLD_OT', 'MODAL2_E_CLD_OT', 'MYDAL2_E_CLD_OT', 'MODAL2_D_CLD_OT', 'MYDAL2_D_CLD_OT', 'MODAL2_M_CLD_RD', 'MYDAL2_M_CLD_RD', 'MODAL2_E_CLD_RD', 'MYDAL2_E_CLD_RD', 'MODAL2_D_CLD_RD', 'MYDAL2_D_CLD_RD', 'MODAL2_M_CLD_WP', 'MYDAL2_M_CLD_WP', 'MODAL2_E_CLD_WP', 'MYDAL2_E_CLD_WP', 'MODAL2_D_CLD_WP', 'MYDAL2_D_CLD_WP', 'MOD_721D_RR', 'MYD_721D_RR', 'GISS_TA_M', 'GISS_TA_Y', 'ICESAT_ELEV_G', 'MCD12C1_T1', 'MOD_LSTAD_M', 'MOD_LSTAD_E', 'MOD_LSTAN_M', 'MOD_LSTAN_E', 'MOD_LSTD_M', 'MOD_LSTD_E', 'MOD_LSTD_D', 'MOD_LSTN_M', 'MOD_LSTN_E', 'MOD_LSTN_D', 'MOD15A2_M_LAI', 'MOD15A2_E_LAI', 'MOD17A2_M_PSN', 'MOD17A2_E_PSN', 'CERES_NETFLUX_M', 'CERES_NETFLUX_E', 'CERES_NETFLUX_D', 'AURA_NO2_M', 'AURA_NO2_E', 'AURA_NO2_D', 'CERES_LWFLUX_M', 'CERES_LWFLUX_E', 'CERES_LWFLUX_D', 'AURA_OZONE_M', 'AURA_OZONE_E', 'AURA_OZONE_D', 'PermafrostNSIDC', 'SEDAC_POP', 'GPM_3IMERGM', 'TRMM_3B43M', 'GPM_3IMERGDL', 'TRMM_3B43D', 'CERES_SWFLUX_M', 'CERES_SWFLUX_E', 'CERES_SWFLUX_D', 'SCSIE_W', 'NISE_D', 'AQUARIUS_SSS_M', 'AQUARIUS_SSS_W', 'AVHRR_SST_M', 'AVHRR_SST_E', 'MYD28M', 'MYD28W', 'MWOI_SST_M', 'MWOI_SST_W', 'MWOI_SST_D', 'AMSRE_SSTAn_M', 'AMSRE_SSTAn_W', 'AMSRE_SSTAn_D', 'MOD10C1_M_SNOW', 'MOD10C1_E_SNOW', 'MOD10C1_D_SNOW', 'SWE_M', 'CERES_INSOL_M', 'CERES_INSOL_E', 'CERES_INSOL_D', 'SRTM_RAMP2_TOPO', 'MOD_143D_RR', 'MYD_143D_RR', 'VIIRS_543D', 'AURA_UVI_CLIM_M', 'MOD_NDVI_M', 'MOD_NDVI_16', 'GRACE_LWE_M', 'MODAL2_M_SKY_WV', 'MYDAL2_M_SKY_WV', 'MODAL2_E_SKY_WV', 'MYDAL2_E_SKY_WV', 'MODAL2_D_SKY_WV', 'MYDAL2_D_SKY_WV'])"
"odict_keys(['MOD14A1_M_FIRE', 'MOD14A1_E_FIRE', 'MOD14A1_D_FIRE', 'MODAL2_M_AER_OD', 'MYDAL2_M_AER_OD', 'MODAL2_E_AER_OD', 'MYDAL2_E_AER_OD', 'MODAL2_D_AER_OD', 'MYDAL2_D_AER_OD', 'MODAL2_M_AER_RA', 'MYDAL2_M_AER_RA', 'MODAL2_E_AER_RA', 'MYDAL2_E_AER_RA', 'MODAL2_D_AER_RA', 'MYDAL2_D_AER_RA', 'MCD43C3_M_BSA', 'MCD43C3_E_BSA', 'MOD_LSTD_CLIM_M', 'MOD_LSTD_CLIM_E', 'MOD_LSTN_CLIM_M', 'MOD_LSTN_CLIM_E', 'AVHRR_CLIM_M', 'AVHRR_CLIM_W', 'GEBCO_BATHY', 'BlueMarbleNG', 'BlueMarbleNG-TB', 'MOP_CO_M', 'MY1DMM_CHLORA', 'MY1DMW_CHLORA', 'MODAL2_M_CLD_FR', 'MYDAL2_M_CLD_FR', 'MODAL2_E_CLD_FR', 'MYDAL2_E_CLD_FR', 'MODAL2_D_CLD_FR', 'MYDAL2_D_CLD_FR', 'MODAL2_M_CLD_OT', 'MYDAL2_M_CLD_OT', 'MODAL2_E_CLD_OT', 'MYDAL2_E_CLD_OT', 'MODAL2_D_CLD_OT', 'MYDAL2_D_CLD_OT', 'MODAL2_M_CLD_RD', 'MYDAL2_M_CLD_RD', 'MODAL2_E_CLD_RD', 'MYDAL2_E_CLD_RD', 'MODAL2_D_CLD_RD', 'MYDAL2_D_CLD_RD', 'MODAL2_M_CLD_WP', 'MYDAL2_M_CLD_WP', 'MODAL2_E_CLD_WP', 'MYDAL2_E_CLD_WP', 'MODAL2_D_CLD_WP', 'MYDAL2_D_CLD_WP', 'MOD_721D_RR', 'MYD_721D_RR', 'GISS_TA_M', 'GISS_TA_Y', 'ICESAT_ELEV_G', 'MCD12C1_T1', 'MOD_LSTAD_M', 'MOD_LSTAD_E', 'MOD_LSTAN_M', 'MOD_LSTAN_E', 'MOD_LSTD_M', 'MOD_LSTD_E', 'MOD_LSTD_D', 'MOD_LSTN_M', 'MOD_LSTN_E', 'MOD_LSTN_D', 'MOD15A2_M_LAI', 'MOD15A2_E_LAI', 'MOD17A3H_Y_NPP', 'CERES_NETFLUX_M', 'CERES_NETFLUX_E', 'CERES_NETFLUX_D', 'AURA_NO2_M', 'AURA_NO2_E', 'AURA_NO2_D', 'CERES_LWFLUX_M', 'CERES_LWFLUX_E', 'CERES_LWFLUX_D', 'AURA_OZONE_M', 'AURA_OZONE_E', 'AURA_OZONE_D', 'PermafrostNSIDC', 'SEDAC_POP', 'GPM_3IMERGM', 'TRMM_3B43M', 'GPM_3IMERGDL', 'TRMM_3B43D', 'CERES_SWFLUX_M', 'CERES_SWFLUX_E', 'CERES_SWFLUX_D', 'SCSIE_W', 'NISE_D', 'AQUARIUS_SSS_M', 'AQUARIUS_SSS_W', 'AVHRR_SST_M', 'AVHRR_SST_E', 'MYD28M', 'MYD28W', 'MWOI_SST_M', 'MWOI_SST_W', 'MWOI_SST_D', 'AMSRE_SSTAn_M', 'AMSRE_SSTAn_W', 'AMSRE_SSTAn_D', 'MOD10C1_M_SNOW', 'MOD10C1_E_SNOW', 'MOD10C1_D_SNOW', 'SWE_M', 'CERES_INSOL_M', 'CERES_INSOL_E', 'CERES_INSOL_D', 'SRTM_RAMP2_TOPO', 'MOD_143D_RR', 'MYD_143D_RR', 'VIIRS_543D', 'AURA_UVI_CLIM_M', 'MOD_NDVI_M', 'MOD_NDVI_16', 'GRACE_LWE_M', 'MODAL2_M_SKY_WV', 'MYDAL2_M_SKY_WV', 'MODAL2_E_SKY_WV', 'MYDAL2_E_SKY_WV', 'MODAL2_D_SKY_WV', 'MYDAL2_D_SKY_WV'])"
]
},
"execution_count": 2,
Expand Down Expand Up @@ -122,7 +122,7 @@
"BBox: (-180.0, -90.0, 180.0, 90.0)\n",
"CRS: ['EPSG:4326']\n",
"Styles: {}\n",
"Timestamps: ['2006-09-01/2006-09-14/P1D', '2006-09-17/2006-10-10/P1D', '2006-10-12/2006-11-18/P1D', '2006-11-21/2007-08-16/P1D', '2007-08-18', '2007-08-20/2007-09-11/P1D', '2007-09-15/2007-12-30/P1D', '2008-01-01/2008-06-12/P1D', '2008-06-14', '2008-06-16/2008-07-12/P1D', '2008-07-14/2008-09-17/P1D', '2008-09-19', '2008-09-22/2008-10-17/P1D', '2008-10-19/2008-10-22/P1D', '2008-10-28/2008-12-02/P1D', '2008-12-04/2008-12-20/P1D', '2008-12-23/2008-12-30/P1D', '2009-01-01/2009-01-20/P1D', '2009-01-22/2009-04-19/P1D', '2009-04-23/2009-07-05/P1D', '2009-07-08/2009-12-30/P1D', '2010-01-01/2010-07-16/P1D', '2010-07-18/2010-12-07/P1D', '2010-12-09/2010-12-30/P1D', '2011-01-01/2011-01-25/P1D', '2011-01-27/2011-03-19/P1D', '2011-03-21/2011-07-23/P1D', '2011-07-27/2011-08-27/P1D', '2011-08-30/2011-12-13/P1D', '2011-12-15/2012-02-19/P1D', '2012-02-21/2013-12-01/P1D', '2013-12-04/2018-03-12/P1D', '2018-03-14/2018-05-16/P1D', '2018-05-18/2018-09-17/P1D', '2018-09-19/2022-05-04/P1D', '2022-05-06/2022-11-26/P1D']\n"
"Timestamps: ['2006-09-01/2006-09-14/P1D', '2006-09-17/2006-10-10/P1D', '2006-10-12/2006-11-18/P1D', '2006-11-21/2007-08-16/P1D', '2007-08-18', '2007-08-20/2007-09-11/P1D', '2007-09-15/2007-12-30/P1D', '2008-01-01/2008-06-12/P1D', '2008-06-14', '2008-06-16/2008-07-12/P1D', '2008-07-14/2008-09-17/P1D', '2008-09-19', '2008-09-22/2008-10-17/P1D', '2008-10-19/2008-10-22/P1D', '2008-10-28/2008-12-02/P1D', '2008-12-04/2008-12-20/P1D', '2008-12-23/2008-12-30/P1D', '2009-01-01/2009-01-20/P1D', '2009-01-22/2009-04-19/P1D', '2009-04-23/2009-07-05/P1D', '2009-07-08/2009-12-30/P1D', '2010-01-01/2010-07-16/P1D', '2010-07-18/2010-12-07/P1D', '2010-12-09/2010-12-30/P1D', '2011-01-01/2011-01-25/P1D', '2011-01-27/2011-03-19/P1D', '2011-03-21/2011-07-23/P1D', '2011-07-27/2011-08-27/P1D', '2011-08-30/2011-12-13/P1D', '2011-12-15/2012-02-19/P1D', '2012-02-21/2013-12-01/P1D', '2013-12-04/2018-03-12/P1D', '2018-03-14/2018-05-16/P1D', '2018-05-18/2018-09-17/P1D', '2018-09-19/2022-05-04/P1D', '2022-05-06/2022-12-21/P1D', '2022-12-23/2023-04-01/P1D']\n"
]
},
{
Expand Down Expand Up @@ -171,7 +171,7 @@
{
"data": {
"text/plain": [
"<owslib.util.ResponseWrapper at 0x7fc5710cba90>"
"<owslib.util.ResponseWrapper at 0x7fd3c03108e0>"
]
},
"execution_count": 5,
Expand Down Expand Up @@ -290,7 +290,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.13"
"version": "3.8.15"
}
},
"nbformat": 4,
Expand Down

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