Removed salem and implemented rioxarray for gridded subsetting #266
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huard
approved these changes
May 4, 2020
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@richardarsenault This is fixed, but I fear it's too short to deploy this for tomorrow. |
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Cool, thanks! No problem, I'll test it on workbooks running on my local server and share my screen if needed. |
tlvu
added a commit
to Ouranosinc/PAVICS-e2e-workflow-tests
that referenced
this pull request
May 6, 2020
PR Ouranosinc/raven#266 (commit Ouranosinc/raven@0763bf5) removed salem dependency and replaced with rioxarray.
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Rebuilding new Jupyter env to include rioxarray and remove salem, which also unpin geopandas and pandas. |
tlvu
added a commit
to Ouranosinc/PAVICS-e2e-workflow-tests
that referenced
this pull request
May 7, 2020
…em-replaced-by-rioxarray docker: new build to remove salem, replaced by rioxarray and add packages for the custom_climate_portraits branch Now we do not need a separate docker build for the [`custom_climate_portraits`](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/tree/custom_climate_portraits) branch (PR #35). That branch should only be used for notebook changes. Jupyter env change should directly PR to `master`. Did not add the full `holoviz` package since it seems to freeze the build (stuck in Solving Environment for more than 25 mins). Also changed the base image to `continuumio/miniconda3` since the previous one was deprecated. Raven PR Ouranosinc/raven#266 (commit Ouranosinc/raven@0763bf5) removed salem dependency and replaced with rioxarray. salem was previously introduced in PR #36 (commit f916bea). Passing Jenkins build: http://jenkins.ouranos.ca/job/PAVICS-e2e-workflow-tests/job/new-docker-image-to-remove-salem-replaced-by-rioxarray/lastSuccessfulBuild/console, new docker build: http://jenkins.ouranos.ca/job/PAVICS-e2e-workflow-tests/job/new-docker-image-to-remove-salem-replaced-by-rioxarray/4/console Jenkins build against Raven notebooks no import error http://jenkins.ouranos.ca/job/PAVICS-e2e-workflow-tests/job/new-docker-image-to-remove-salem-replaced-by-rioxarray/3/consoleFull Noticeable changes: ```diff # conda release of bokeh seems to trail behind pypi > - bokeh=2.0.1=py37hc8dfbb8_0 < - bokeh==2.0.2 > - jupyter_bokeh=2.0.1=py_0 # should already exist, not sure why conda env export report this as new > - dask=2.15.0=py_0 # unpinned since salem is removed < - pandas=0.25.3=py37hb3f55d8_0 > - pandas=1.0.3=py37h0da4684_1 < - salem==0.2.4 > - rioxarray=0.0.26=py_0 # packages for custom_climate_portraits branch > - geoviews=1.8.1=py_0 > - h5netcdf=0.8.0=py_0 > - holoviews=1.13.2=pyh9f0ad1d_0 > - panel=0.9.5=py_1 > - hvplot=0.5.2=py_0 > - pscript=0.7.3=py_0 > - siphon=0.8.0=py37_1002 > - ipython-blocking==0.2.1 ``` Full conda env export Diff: [200427-200506-conda-env-export.diff.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/4590227/200427-200506-conda-env-export.diff.txt) ```diff 2a3 > - bokeh 15c16 < - bleach=3.1.4=pyh9f0ad1d_0 --- > - bleach=3.1.5=pyh9f0ad1d_0 16a18 > - bokeh=2.0.1=py37hc8dfbb8_0 23c25 < - cartopy=0.17.0=py37h17ca249_1015 --- > - cartopy=0.18.0=py37h4b180d9_0 25c27 < - cdtime=3.1.3=py37h006a570_2 --- > - cdtime=3.1.3=py37h006a570_3 30,31c32,33 < - cfitsio=3.470=h00dd3da_3 < - cftime=1.1.1.2=py37h03ebfcd_0 --- > - cfitsio=3.470=h3eac812_5 > - cftime=1.1.2=py37h03ebfcd_0 33c35 < - click=7.1.1=pyh8c360ce_0 --- > - click=7.1.2=pyh9f0ad1d_0 36c38 < - cloudpickle=1.3.0=py_0 --- > - cloudpickle=1.4.1=py_0 37a40 > - colorcet=2.0.1=py_0 40c43 < - cryptography=2.8=py37hb09aad4_2 --- > - cryptography=2.9.2=py37hb09aad4_0 43a47 > - dask=2.15.0=py_0 44a49,50 > - datashader=0.10.0=py_0 > - datashape=0.5.4=py_1 49a56 > - distributed=2.15.2=py37hc8dfbb8_0 58c65 < - fiona=1.8.13=py37h900e953_0 --- > - fiona=1.8.13=py37h0492a4a_1 61a69 > - fsspec=0.7.3=py_0 65a74 > - geopandas=0.7.0=py_1 67a77,78 > - geoviews=1.8.1=py_0 > - geoviews-core=1.8.1=py_0 71,72c82,83 < - gitdb=4.0.4=py_0 < - gitpython=3.1.1=py_0 --- > - gitdb=4.0.5=py_0 > - gitpython=3.1.2=py_0 77a89,90 > - h5netcdf=0.8.0=py_0 > - h5py=2.10.0=nompi_py37h513d04c_102 79a93,94 > - heapdict=1.0.1=py_0 > - holoviews=1.13.2=pyh9f0ad1d_0 87c102 < - ipython=7.13.0=py37hc8dfbb8_2 --- > - ipython=7.14.0=py37hc8dfbb8_0 97a113 > - jupyter_bokeh=2.0.1=py_0 105c121 < - jupyterlab=2.1.1=py_0 --- > - jupyterlab=2.1.2=py_0 116,117c132,133 < - libcdms=3.1.2=nompi_h70c2909_110 < - libcf=1.0.3=nompi_ha20483a_107 --- > - libcdms=3.1.2=hf60d256_111 > - libcf=1.0.3=py37hda0e254_108 121,122c137,138 < - libdrs=3.1.2=nompi_h4ca35b2_111 < - libdrs_f=3.1.2=nompi_hd82fec8_109 --- > - libdrs=3.1.2=hc2e2db3_112 > - libdrs_f=3.1.2=hae7e664_110 132a149 > - libllvm8=8.0.1=hc9558a2_0 137a155 > - libprotobuf=3.11.4=h8b12597_0 151a170,171 > - llvmlite=0.31.0=py37h5202443_1 > - locket=0.2.0=py_2 153c173 < - lz4-c=1.9.2=he1b5a44_0 --- > - lz4-c=1.9.2=he1b5a44_1 154a175 > - markdown=3.2.1=py_0 161a183,184 > - msgpack-python=1.0.0=py37h99015e2_1 > - multipledispatch=0.6.0=py_0 164c187 < - nbdime=2.0.0=py37hc8dfbb8_0 --- > - nbdime=2.0.0=py_1 176c199,200 < - numpy=1.18.1=py37h8960a57_1 --- > - numba=0.48.0=py37hb3f55d8_0 > - numpy=1.18.4=py37h8960a57_0 186c210 < - pandas=0.25.3=py37hb3f55d8_0 --- > - pandas=1.0.3=py37h0da4684_1 188a213,214 > - panel=0.9.5=py_1 > - param=1.9.3=py_0 189a216 > - partd=1.1.0=py_0 194c221 < - pip=20.0.2=py_2 --- > - pip=20.1=pyh9f0ad1d_0 196c223 < - pluggy=0.13.0=py37_0 --- > - pluggy=0.13.1=py37hc8dfbb8_1 203a231,233 > - protobuf=3.11.4=py37h3340039_1 > - pscript=0.7.3=py_0 > - psutil=5.7.0=py37h8f50634_1 207a238,239 > - pyct=0.4.6=py_0 > - pyct-core=0.4.6=py_0 213d244 < - pykdtree=1.3.1=py37h03ebfcd_1003 216,217c247,248 < - pyproj=2.6.0=py37h34dd122_1 < - pyqt=5.12.3=py37hcca6a23_1 --- > - pyproj=2.6.1.post1=py37h34dd122_0 > - pyqt=5.12.3=py37h8685d9f_3 227c258,259 < - pytz=2019.3=py_0 --- > - pytz=2020.1=pyh9f0ad1d_0 > - pyviz_comms=0.7.4=pyh8c360ce_0 237a270 > - rioxarray=0.0.26=py_0 245a279 > - siphon=0.8.0=py37_1002 247c281 < - smmap=3.0.2=pyh9f0ad1d_0 --- > - smmap=3.0.4=pyh9f0ad1d_0 248a283 > - sortedcontainers=2.1.0=py_0 252a288 > - tblib=1.6.0=py_0 259a296 > - tqdm=4.46.0=pyh9f0ad1d_0 261a299 > - typing_extensions=3.7.4.2=py_0 290a329 > - zict=2.0.0=py_0 297d335 < - bokeh==2.0.2 302,303d339 < - distributed==2.15.0 < - fsspec==0.7.3 306,307c342 < - geopandas==0.7.0 < - heapdict==1.0.1 --- > - ipython-blocking==0.2.1 309,311d343 < - llvmlite==0.32.0 < - locket==0.2.0 < - markdown==3.2.1 313,315d344 < - msgpack==1.0.0 < - numba==0.49.0 < - partd==1.1.0 318d346 < - psutil==5.7.0 319a348 > - pyqtchart==5.12 323d351 < - salem==0.2.4 325,327d352 < - sortedcontainers==2.1.0 < - tblib==1.6.0 < - typing-extensions==3.7.4.2 330d354 < - zict==2.0.0 ``` [200506-200507-conda-env-export.diff.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/4594860/200506-200507-conda-env-export.diff.txt) ```diff 60c60 < - esgf-compute-api=2.3.3=py_0 --- > - esgf-compute-api=2.3.4=py_0 94a95 > - hvplot=0.5.2=py_0 262c263 < - pyzmq=19.0.0=py37hac76be4_1 --- > - pyzmq=19.0.1=py37hac76be4_0 355c356 < prefix: /usr/local/envs/birdy --- > prefix: /opt/conda/envs/birdy ``` Full new conda env export: [200506-conda-env-export.yml.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/4590228/200506-conda-env-export.yml.txt) ``` name: birdy channels: - bokeh - cdat - conda-forge - defaults dependencies: - _libgcc_mutex=0.1=conda_forge - _openmp_mutex=4.5=0_gnu - affine=2.3.0=py_0 - alembic=1.4.2=pyh9f0ad1d_0 - async_generator=1.10=py_0 - attrs=19.3.0=py_0 - backcall=0.1.0=py_0 - beautifulsoup4=4.9.0=py37hc8dfbb8_0 - bleach=3.1.5=pyh9f0ad1d_0 - blinker=1.4=py_1 - bokeh=2.0.1=py37hc8dfbb8_0 - boost-cpp=1.72.0=h8e57a91_0 - branca=0.3.1=py_0 - brotlipy=0.7.0=py37h8f50634_1000 - bzip2=1.0.8=h516909a_2 - ca-certificates=2020.4.5.1=hecc5488_0 - cairo=1.16.0=hcf35c78_1003 - cartopy=0.18.0=py37h4b180d9_0 - cdat_info=8.2=py_7 - cdtime=3.1.3=py37h006a570_3 - cdutil=8.2=py_2 - certifi=2020.4.5.1=py37hc8dfbb8_0 - certipy=0.1.3=py_0 - cffi=1.14.0=py37hd463f26_0 - cfitsio=3.470=h3eac812_5 - cftime=1.1.2=py37h03ebfcd_0 - chardet=3.0.4=py37hc8dfbb8_1006 - click=7.1.2=pyh9f0ad1d_0 - click-plugins=1.1.1=py_0 - cligj=0.5.0=py_0 - cloudpickle=1.4.1=py_0 - colorama=0.4.3=py_0 - colorcet=2.0.1=py_0 - configurable-http-proxy=4.2.1=node13_he01fd0c_0 - coverage=5.1=py37h8f50634_0 - cryptography=2.9.2=py37hb09aad4_0 - curl=7.69.1=h33f0ec9_0 - cycler=0.10.0=py_2 - cytoolz=0.10.1=py37h516909a_0 - dask=2.15.0=py_0 - dask-core=2.15.0=py_0 - datashader=0.10.0=py_0 - datashape=0.5.4=py_1 - dbus=1.13.6=he372182_0 - decorator=4.4.2=py_0 - defusedxml=0.6.0=py_0 - descartes=1.1.0=py_4 - distarray=2.12.2=py_1 - distributed=2.15.2=py37hc8dfbb8_0 - docopt=0.6.2=py_1 - dv3d=8.2=py_0 - entrypoints=0.3=py37hc8dfbb8_1001 - esgf-compute-api=2.3.3=py_0 - esmf=8.0.0=nompi_hb0fcdcb_6 - esmpy=8.0.0=nompi_py37hf0e99fa_1 - expat=2.2.9=he1b5a44_2 - ffmpeg=4.2=h167e202_0 - fiona=1.8.13=py37h0492a4a_1 - fontconfig=2.13.1=h86ecdb6_1001 - freetype=2.10.1=he06d7ca_0 - freexl=1.0.5=h14c3975_1002 - fsspec=0.7.3=py_0 - future=0.18.2=py37hc8dfbb8_1 - g2clib=1.6.0=hf3f1b0b_9 - gdal=3.0.4=py37h4b180d9_6 - genutil=8.2=py37hc1659b7_3 - geopandas=0.7.0=py_1 - geos=3.8.1=he1b5a44_0 - geotiff=1.5.1=h05acad5_10 - geoviews=1.8.1=py_0 - geoviews-core=1.8.1=py_0 - gettext=0.19.8.1=hc5be6a0_1002 - ghostscript=9.22=hf484d3e_1001 - giflib=5.2.1=h516909a_2 - gitdb=4.0.5=py_0 - gitpython=3.1.2=py_0 - glib=2.64.2=h6f030ca_0 - gmp=6.2.0=he1b5a44_2 - gnutls=3.6.5=hd3a4fd2_1002 - gst-plugins-base=1.14.5=h0935bb2_2 - gstreamer=1.14.5=h36ae1b5_2 - h5netcdf=0.8.0=py_0 - h5py=2.10.0=nompi_py37h513d04c_102 - hdf4=4.2.13=hf30be14_1003 - hdf5=1.10.5=nompi_h3c11f04_1104 - heapdict=1.0.1=py_0 - holoviews=1.13.2=pyh9f0ad1d_0 - icu=64.2=he1b5a44_1 - idna=2.9=py_1 - imageio=2.8.0=py_0 - importlib-metadata=1.6.0=py37hc8dfbb8_0 - importlib_metadata=1.6.0=0 - ipykernel=5.2.1=py37h43977f1_0 - ipyleaflet=0.12.4=pyh9f0ad1d_0 - ipython=7.14.0=py37hc8dfbb8_0 - ipython_genutils=0.2.0=py_1 - ipywidgets=7.5.1=py_0 - jasper=1.900.1=h07fcdf6_1006 - jedi=0.17.0=py37hc8dfbb8_0 - jinja2=2.11.2=pyh9f0ad1d_0 - jpeg=9c=h14c3975_1001 - json-c=0.13.1=h14c3975_1001 - json5=0.9.0=py_0 - jsonschema=3.2.0=py37hc8dfbb8_1 - jupyter=1.0.0=py_2 - jupyter_bokeh=2.0.1=py_0 - jupyter_client=6.1.3=py_0 - jupyter_console=6.1.0=py_1 - jupyter_core=4.6.3=py37hc8dfbb8_1 - jupyter_server=0.1.1=py37_0 - jupyter_telemetry=0.0.5=py_0 - jupyterhub=1.1.0=py37_2 - jupyterhub-base=1.1.0=py37_2 - jupyterlab=2.1.2=py_0 - jupyterlab_pygments=0.1.1=pyh9f0ad1d_0 - jupyterlab_server=1.1.1=py_0 - kealib=1.4.13=hec59c27_0 - kiwisolver=1.2.0=py37h99015e2_0 - krb5=1.17.1=h2fd8d38_0 - lame=3.100=h14c3975_1001 - lazy-object-proxy=1.4.3=py37h8f50634_2 - ld_impl_linux-64=2.34=h53a641e_0 - libblas=3.8.0=11_openblas - libcblas=3.8.0=11_openblas - libcdms=3.1.2=hf60d256_111 - libcf=1.0.3=py37hda0e254_108 - libclang=9.0.1=default_hde54327_0 - libcurl=7.69.1=hf7181ac_0 - libdap4=3.20.6=h1d1bd15_0 - libdrs=3.1.2=hc2e2db3_112 - libdrs_f=3.1.2=hae7e664_110 - libedit=3.1.20170329=hf8c457e_1001 - libffi=3.2.1=he1b5a44_1007 - libgcc-ng=9.2.0=h24d8f2e_2 - libgdal=3.0.4=h3dfc09a_6 - libgfortran-ng=7.3.0=hdf63c60_5 - libgomp=9.2.0=h24d8f2e_2 - libiconv=1.15=h516909a_1006 - libidn2=2.3.0=h516909a_0 - libkml=1.3.0=hb574062_1011 - liblapack=3.8.0=11_openblas - libllvm8=8.0.1=hc9558a2_0 - libllvm9=9.0.1=he513fc3_1 - libnetcdf=4.7.4=nompi_h9f9fd6a_101 - libopenblas=0.3.6=h6e990d7_6 - libpng=1.6.37=hed695b0_1 - libpq=12.2=h5513abc_1 - libprotobuf=3.11.4=h8b12597_0 - libsodium=1.0.17=h516909a_0 - libspatialindex=1.9.3=he1b5a44_3 - libspatialite=4.3.0a=h2482549_1038 - libssh2=1.8.2=h22169c7_2 - libstdcxx-ng=9.2.0=hdf63c60_2 - libtiff=4.1.0=hc7e4089_6 - libunistring=0.9.10=h14c3975_0 - libuuid=2.32.1=h14c3975_1000 - libuv=1.34.0=h516909a_0 - libwebp-base=1.1.0=h516909a_3 - libxcb=1.13=h14c3975_1002 - libxkbcommon=0.10.0=he1b5a44_0 - libxml2=2.9.10=hee79883_0 - libxslt=1.1.33=h31b3aaa_0 - llvmlite=0.31.0=py37h5202443_1 - locket=0.2.0=py_2 - lxml=4.5.0=py37he3881c9_1 - lz4-c=1.9.2=he1b5a44_1 - mako=1.1.0=py_0 - markdown=3.2.1=py_0 - markupsafe=1.1.1=py37h8f50634_1 - matplotlib=3.2.1=0 - matplotlib-base=3.2.1=py37h30547a4_0 - mechanicalsoup=0.12.0=py_0 - mesalib=18.3.1=h590aaf7_0 - mistune=0.8.4=py37h8f50634_1001 - more-itertools=8.2.0=py_0 - msgpack-python=1.0.0=py37h99015e2_1 - multipledispatch=0.6.0=py_0 - munch=2.5.0=py_0 - nbconvert=5.6.1=py37hc8dfbb8_1 - nbdime=2.0.0=py_1 - nbformat=5.0.6=py_0 - nbval=0.9.5=py_0 - ncurses=6.1=hf484d3e_1002 - netcdf-fortran=4.5.2=nompi_h45d7149_104 - netcdf4=1.5.3=nompi_py37hec16513_103 - nettle=3.4.1=h1bed415_1002 - networkx=2.4=py_1 - nodejs=13.13.0=hf5d1a2b_0 - notebook=6.0.3=py37_0 - nspr=4.25=he1b5a44_0 - nss=3.47=he751ad9_0 - numba=0.48.0=py37hb3f55d8_0 - numpy=1.18.4=py37h8960a57_0 - oauthlib=3.0.1=py_0 - olefile=0.46=py_0 - openblas=0.3.6=h6e990d7_6 - openh264=1.8.0=hdbcaa40_1000 - openjpeg=2.3.1=h981e76c_3 - openssl=1.1.1g=h516909a_0 - owslib=0.19.2=py_1 - packaging=20.1=py_0 - pamela=1.0.0=py_0 - pandas=1.0.3=py37h0da4684_1 - pandoc=2.9.2.1=0 - pandocfilters=1.4.2=py_1 - panel=0.9.5=py_1 - param=1.9.3=py_0 - parso=0.7.0=pyh9f0ad1d_0 - partd=1.1.0=py_0 - pcre=8.44=he1b5a44_0 - pexpect=4.8.0=py37hc8dfbb8_1 - pickleshare=0.7.5=py37hc8dfbb8_1001 - pillow=7.1.2=py37h718be6c_0 - pip=20.1=pyh9f0ad1d_0 - pixman=0.38.0=h516909a_1003 - pluggy=0.13.1=py37hc8dfbb8_1 - poppler=0.67.0=h14e79db_8 - poppler-data=0.4.9=1 - postgresql=12.2=h8573dbc_1 - proj=7.0.0=h966b41f_3 - prometheus_client=0.7.1=py_0 - prompt-toolkit=3.0.5=py_0 - prompt_toolkit=3.0.5=0 - protobuf=3.11.4=py37h3340039_1 - pscript=0.7.3=py_0 - psutil=5.7.0=py37h8f50634_1 - pthread-stubs=0.4=h14c3975_1001 - ptyprocess=0.6.0=py_1001 - py=1.8.1=py_0 - pycparser=2.20=py_0 - pyct=0.4.6=py_0 - pyct-core=0.4.6=py_0 - pycurl=7.43.0.5=py37h16ce93b_0 - pydap=3.2.2=py37_1000 - pyepsg=0.4.0=py_0 - pygments=2.6.1=py_0 - pyjwt=1.7.1=py_0 - pyopenssl=19.1.0=py_1 - pyparsing=2.4.7=pyh9f0ad1d_0 - pyproj=2.6.1.post1=py37h34dd122_0 - pyqt=5.12.3=py37h8685d9f_3 - pyrsistent=0.16.0=py37h8f50634_0 - pyshp=2.1.0=py_0 - pysocks=1.7.1=py37hc8dfbb8_1 - pytest=5.4.1=py37hc8dfbb8_0 - python=3.7.6=h8356626_5_cpython - python-dateutil=2.8.1=py_0 - python-editor=1.0.4=py_0 - python-json-logger=0.1.11=py_0 - python_abi=3.7=1_cp37m - pytz=2020.1=pyh9f0ad1d_0 - pyviz_comms=0.7.4=pyh8c360ce_0 - pywavelets=1.1.1=py37h03ebfcd_1 - pyyaml=5.3.1=py37h8f50634_0 - pyzmq=19.0.0=py37hac76be4_1 - qt=5.12.5=hd8c4c69_1 - qtconsole=4.7.3=pyh9f0ad1d_0 - qtpy=1.9.0=py_0 - rasterio=1.1.3=py37h900e953_0 - readline=8.0=hf8c457e_0 - regionmask=0.5.0=py_1 - requests=2.23.0=pyh8c360ce_2 - rioxarray=0.0.26=py_0 - rtree=0.9.4=py37h8526d28_1 - ruamel.yaml=0.16.6=py37h8f50634_1 - ruamel.yaml.clib=0.2.0=py37h8f50634_1 - scikit-image=0.16.2=py37hb3f55d8_0 - scipy=1.4.1=py37ha3d9a3c_3 - send2trash=1.5.0=py_0 - setuptools=46.1.3=py37hc8dfbb8_0 - shapely=1.7.0=py37hc88ce51_3 - siphon=0.8.0=py37_1002 - six=1.14.0=py_1 - smmap=3.0.4=pyh9f0ad1d_0 - snuggs=1.4.7=py_0 - sortedcontainers=2.1.0=py_0 - soupsieve=1.9.4=py37hc8dfbb8_1 - sqlalchemy=1.3.16=py37h8f50634_0 - sqlite=3.30.1=hcee41ef_0 - tbb=2018.0.5=h2d50403_0 - tblib=1.6.0=py_0 - terminado=0.8.3=py37hc8dfbb8_1 - testpath=0.4.4=py_0 - threddsclient=0.4.2=py_0 - tiledb=1.7.7=h8efa9f0_1 - tk=8.6.10=hed695b0_0 - toolz=0.10.0=py_0 - tornado=6.0.4=py37h8f50634_1 - tqdm=4.46.0=pyh9f0ad1d_0 - traitlets=4.3.3=py37hc8dfbb8_1 - traittypes=0.2.1=py_1 - typing_extensions=3.7.4.2=py_0 - tzcode=2020a=h516909a_0 - udunits2=2.2.27.6=h4e0c4b3_1001 - urllib3=1.25.9=py_0 - vcs=8.2=py_2 - voila=0.1.21=py_0 - vtk-cdat=8.2.0.8.2=py37_mesalibhead77ed_0 - wcwidth=0.1.9=pyh9f0ad1d_0 - webencodings=0.5.1=py_1 - webob=1.8.6=py_0 - wget=1.20.1=h22169c7_0 - wheel=0.34.2=py_1 - widgetsnbextension=3.5.1=py37_0 - x264=1!152.20180806=h14c3975_0 - xarray=0.15.1=py_0 - xerces-c=3.2.2=h8412b87_1004 - xorg-kbproto=1.0.7=h14c3975_1002 - xorg-libice=1.0.10=h516909a_0 - xorg-libsm=1.2.3=h84519dc_1000 - xorg-libx11=1.6.9=h516909a_0 - xorg-libxau=1.0.9=h14c3975_0 - xorg-libxdmcp=1.1.3=h516909a_0 - xorg-libxext=1.3.4=h516909a_0 - xorg-libxrender=0.9.10=h516909a_1002 - xorg-renderproto=0.11.1=h14c3975_1002 - xorg-xextproto=7.3.0=h14c3975_1002 - xorg-xproto=7.0.31=h14c3975_1007 - xz=5.2.5=h516909a_0 - yaml=0.2.4=h516909a_0 - zeromq=4.3.2=he1b5a44_2 - zict=2.0.0=py_0 - zipp=3.1.0=py_0 - zlib=1.2.11=h516909a_1006 - zstd=1.4.4=h6597ccf_3 - pip: - astunparse==1.6.3 - birdhouse-birdy==0.6.9 - boltons==20.1.0 - bottleneck==1.3.2 - cdms2==3.1.4 - colour==0.1.5 - funcsigs==1.0.2 - geojson==2.5.0 - ipython-blocking==0.2.1 - joblib==0.14.1 - mpld3==0.3 - pint==0.11 - pixiedust==1.1.18 - pyqt5-sip==4.19.18 - pyqtchart==5.12 - pyqtwebengine==5.12.1 - regrid2==3.1.4 - requests-magpie==0.1.1 - scikit-learn==0.22.2.post1 - wrapt==1.12.1 - xclim==0.16.0 prefix: /usr/local/envs/birdy ``` [200507-conda-env-export.yml.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/4594861/200507-conda-env-export.yml.txt) ``` name: birdy channels: - bokeh - cdat - conda-forge - defaults dependencies: - _libgcc_mutex=0.1=conda_forge - _openmp_mutex=4.5=0_gnu - affine=2.3.0=py_0 - alembic=1.4.2=pyh9f0ad1d_0 - async_generator=1.10=py_0 - attrs=19.3.0=py_0 - backcall=0.1.0=py_0 - beautifulsoup4=4.9.0=py37hc8dfbb8_0 - bleach=3.1.5=pyh9f0ad1d_0 - blinker=1.4=py_1 - bokeh=2.0.1=py37hc8dfbb8_0 - boost-cpp=1.72.0=h8e57a91_0 - branca=0.3.1=py_0 - brotlipy=0.7.0=py37h8f50634_1000 - bzip2=1.0.8=h516909a_2 - ca-certificates=2020.4.5.1=hecc5488_0 - cairo=1.16.0=hcf35c78_1003 - cartopy=0.18.0=py37h4b180d9_0 - cdat_info=8.2=py_7 - cdtime=3.1.3=py37h006a570_3 - cdutil=8.2=py_2 - certifi=2020.4.5.1=py37hc8dfbb8_0 - certipy=0.1.3=py_0 - cffi=1.14.0=py37hd463f26_0 - cfitsio=3.470=h3eac812_5 - cftime=1.1.2=py37h03ebfcd_0 - chardet=3.0.4=py37hc8dfbb8_1006 - click=7.1.2=pyh9f0ad1d_0 - click-plugins=1.1.1=py_0 - cligj=0.5.0=py_0 - cloudpickle=1.4.1=py_0 - colorama=0.4.3=py_0 - colorcet=2.0.1=py_0 - configurable-http-proxy=4.2.1=node13_he01fd0c_0 - coverage=5.1=py37h8f50634_0 - cryptography=2.9.2=py37hb09aad4_0 - curl=7.69.1=h33f0ec9_0 - cycler=0.10.0=py_2 - cytoolz=0.10.1=py37h516909a_0 - dask=2.15.0=py_0 - dask-core=2.15.0=py_0 - datashader=0.10.0=py_0 - datashape=0.5.4=py_1 - dbus=1.13.6=he372182_0 - decorator=4.4.2=py_0 - defusedxml=0.6.0=py_0 - descartes=1.1.0=py_4 - distarray=2.12.2=py_1 - distributed=2.15.2=py37hc8dfbb8_0 - docopt=0.6.2=py_1 - dv3d=8.2=py_0 - entrypoints=0.3=py37hc8dfbb8_1001 - esgf-compute-api=2.3.4=py_0 - esmf=8.0.0=nompi_hb0fcdcb_6 - esmpy=8.0.0=nompi_py37hf0e99fa_1 - expat=2.2.9=he1b5a44_2 - ffmpeg=4.2=h167e202_0 - fiona=1.8.13=py37h0492a4a_1 - fontconfig=2.13.1=h86ecdb6_1001 - freetype=2.10.1=he06d7ca_0 - freexl=1.0.5=h14c3975_1002 - fsspec=0.7.3=py_0 - future=0.18.2=py37hc8dfbb8_1 - g2clib=1.6.0=hf3f1b0b_9 - gdal=3.0.4=py37h4b180d9_6 - genutil=8.2=py37hc1659b7_3 - geopandas=0.7.0=py_1 - geos=3.8.1=he1b5a44_0 - geotiff=1.5.1=h05acad5_10 - geoviews=1.8.1=py_0 - geoviews-core=1.8.1=py_0 - gettext=0.19.8.1=hc5be6a0_1002 - ghostscript=9.22=hf484d3e_1001 - giflib=5.2.1=h516909a_2 - gitdb=4.0.5=py_0 - gitpython=3.1.2=py_0 - glib=2.64.2=h6f030ca_0 - gmp=6.2.0=he1b5a44_2 - gnutls=3.6.5=hd3a4fd2_1002 - gst-plugins-base=1.14.5=h0935bb2_2 - gstreamer=1.14.5=h36ae1b5_2 - h5netcdf=0.8.0=py_0 - h5py=2.10.0=nompi_py37h513d04c_102 - hdf4=4.2.13=hf30be14_1003 - hdf5=1.10.5=nompi_h3c11f04_1104 - heapdict=1.0.1=py_0 - holoviews=1.13.2=pyh9f0ad1d_0 - hvplot=0.5.2=py_0 - icu=64.2=he1b5a44_1 - idna=2.9=py_1 - imageio=2.8.0=py_0 - importlib-metadata=1.6.0=py37hc8dfbb8_0 - importlib_metadata=1.6.0=0 - ipykernel=5.2.1=py37h43977f1_0 - ipyleaflet=0.12.4=pyh9f0ad1d_0 - ipython=7.14.0=py37hc8dfbb8_0 - ipython_genutils=0.2.0=py_1 - ipywidgets=7.5.1=py_0 - jasper=1.900.1=h07fcdf6_1006 - jedi=0.17.0=py37hc8dfbb8_0 - jinja2=2.11.2=pyh9f0ad1d_0 - jpeg=9c=h14c3975_1001 - json-c=0.13.1=h14c3975_1001 - json5=0.9.0=py_0 - jsonschema=3.2.0=py37hc8dfbb8_1 - jupyter=1.0.0=py_2 - jupyter_bokeh=2.0.1=py_0 - jupyter_client=6.1.3=py_0 - jupyter_console=6.1.0=py_1 - jupyter_core=4.6.3=py37hc8dfbb8_1 - jupyter_server=0.1.1=py37_0 - jupyter_telemetry=0.0.5=py_0 - jupyterhub=1.1.0=py37_2 - jupyterhub-base=1.1.0=py37_2 - jupyterlab=2.1.2=py_0 - jupyterlab_pygments=0.1.1=pyh9f0ad1d_0 - jupyterlab_server=1.1.1=py_0 - kealib=1.4.13=hec59c27_0 - kiwisolver=1.2.0=py37h99015e2_0 - krb5=1.17.1=h2fd8d38_0 - lame=3.100=h14c3975_1001 - lazy-object-proxy=1.4.3=py37h8f50634_2 - ld_impl_linux-64=2.34=h53a641e_0 - libblas=3.8.0=11_openblas - libcblas=3.8.0=11_openblas - libcdms=3.1.2=hf60d256_111 - libcf=1.0.3=py37hda0e254_108 - libclang=9.0.1=default_hde54327_0 - libcurl=7.69.1=hf7181ac_0 - libdap4=3.20.6=h1d1bd15_0 - libdrs=3.1.2=hc2e2db3_112 - libdrs_f=3.1.2=hae7e664_110 - libedit=3.1.20170329=hf8c457e_1001 - libffi=3.2.1=he1b5a44_1007 - libgcc-ng=9.2.0=h24d8f2e_2 - libgdal=3.0.4=h3dfc09a_6 - libgfortran-ng=7.3.0=hdf63c60_5 - libgomp=9.2.0=h24d8f2e_2 - libiconv=1.15=h516909a_1006 - libidn2=2.3.0=h516909a_0 - libkml=1.3.0=hb574062_1011 - liblapack=3.8.0=11_openblas - libllvm8=8.0.1=hc9558a2_0 - libllvm9=9.0.1=he513fc3_1 - libnetcdf=4.7.4=nompi_h9f9fd6a_101 - libopenblas=0.3.6=h6e990d7_6 - libpng=1.6.37=hed695b0_1 - libpq=12.2=h5513abc_1 - libprotobuf=3.11.4=h8b12597_0 - libsodium=1.0.17=h516909a_0 - libspatialindex=1.9.3=he1b5a44_3 - libspatialite=4.3.0a=h2482549_1038 - libssh2=1.8.2=h22169c7_2 - libstdcxx-ng=9.2.0=hdf63c60_2 - libtiff=4.1.0=hc7e4089_6 - libunistring=0.9.10=h14c3975_0 - libuuid=2.32.1=h14c3975_1000 - libuv=1.34.0=h516909a_0 - libwebp-base=1.1.0=h516909a_3 - libxcb=1.13=h14c3975_1002 - libxkbcommon=0.10.0=he1b5a44_0 - libxml2=2.9.10=hee79883_0 - libxslt=1.1.33=h31b3aaa_0 - llvmlite=0.31.0=py37h5202443_1 - locket=0.2.0=py_2 - lxml=4.5.0=py37he3881c9_1 - lz4-c=1.9.2=he1b5a44_1 - mako=1.1.0=py_0 - markdown=3.2.1=py_0 - markupsafe=1.1.1=py37h8f50634_1 - matplotlib=3.2.1=0 - matplotlib-base=3.2.1=py37h30547a4_0 - mechanicalsoup=0.12.0=py_0 - mesalib=18.3.1=h590aaf7_0 - mistune=0.8.4=py37h8f50634_1001 - more-itertools=8.2.0=py_0 - msgpack-python=1.0.0=py37h99015e2_1 - multipledispatch=0.6.0=py_0 - munch=2.5.0=py_0 - nbconvert=5.6.1=py37hc8dfbb8_1 - nbdime=2.0.0=py_1 - nbformat=5.0.6=py_0 - nbval=0.9.5=py_0 - ncurses=6.1=hf484d3e_1002 - netcdf-fortran=4.5.2=nompi_h45d7149_104 - netcdf4=1.5.3=nompi_py37hec16513_103 - nettle=3.4.1=h1bed415_1002 - networkx=2.4=py_1 - nodejs=13.13.0=hf5d1a2b_0 - notebook=6.0.3=py37_0 - nspr=4.25=he1b5a44_0 - nss=3.47=he751ad9_0 - numba=0.48.0=py37hb3f55d8_0 - numpy=1.18.4=py37h8960a57_0 - oauthlib=3.0.1=py_0 - olefile=0.46=py_0 - openblas=0.3.6=h6e990d7_6 - openh264=1.8.0=hdbcaa40_1000 - openjpeg=2.3.1=h981e76c_3 - openssl=1.1.1g=h516909a_0 - owslib=0.19.2=py_1 - packaging=20.1=py_0 - pamela=1.0.0=py_0 - pandas=1.0.3=py37h0da4684_1 - pandoc=2.9.2.1=0 - pandocfilters=1.4.2=py_1 - panel=0.9.5=py_1 - param=1.9.3=py_0 - parso=0.7.0=pyh9f0ad1d_0 - partd=1.1.0=py_0 - pcre=8.44=he1b5a44_0 - pexpect=4.8.0=py37hc8dfbb8_1 - pickleshare=0.7.5=py37hc8dfbb8_1001 - pillow=7.1.2=py37h718be6c_0 - pip=20.1=pyh9f0ad1d_0 - pixman=0.38.0=h516909a_1003 - pluggy=0.13.1=py37hc8dfbb8_1 - poppler=0.67.0=h14e79db_8 - poppler-data=0.4.9=1 - postgresql=12.2=h8573dbc_1 - proj=7.0.0=h966b41f_3 - prometheus_client=0.7.1=py_0 - prompt-toolkit=3.0.5=py_0 - prompt_toolkit=3.0.5=0 - protobuf=3.11.4=py37h3340039_1 - pscript=0.7.3=py_0 - psutil=5.7.0=py37h8f50634_1 - pthread-stubs=0.4=h14c3975_1001 - ptyprocess=0.6.0=py_1001 - py=1.8.1=py_0 - pycparser=2.20=py_0 - pyct=0.4.6=py_0 - pyct-core=0.4.6=py_0 - pycurl=7.43.0.5=py37h16ce93b_0 - pydap=3.2.2=py37_1000 - pyepsg=0.4.0=py_0 - pygments=2.6.1=py_0 - pyjwt=1.7.1=py_0 - pyopenssl=19.1.0=py_1 - pyparsing=2.4.7=pyh9f0ad1d_0 - pyproj=2.6.1.post1=py37h34dd122_0 - pyqt=5.12.3=py37h8685d9f_3 - pyrsistent=0.16.0=py37h8f50634_0 - pyshp=2.1.0=py_0 - pysocks=1.7.1=py37hc8dfbb8_1 - pytest=5.4.1=py37hc8dfbb8_0 - python=3.7.6=h8356626_5_cpython - python-dateutil=2.8.1=py_0 - python-editor=1.0.4=py_0 - python-json-logger=0.1.11=py_0 - python_abi=3.7=1_cp37m - pytz=2020.1=pyh9f0ad1d_0 - pyviz_comms=0.7.4=pyh8c360ce_0 - pywavelets=1.1.1=py37h03ebfcd_1 - pyyaml=5.3.1=py37h8f50634_0 - pyzmq=19.0.1=py37hac76be4_0 - qt=5.12.5=hd8c4c69_1 - qtconsole=4.7.3=pyh9f0ad1d_0 - qtpy=1.9.0=py_0 - rasterio=1.1.3=py37h900e953_0 - readline=8.0=hf8c457e_0 - regionmask=0.5.0=py_1 - requests=2.23.0=pyh8c360ce_2 - rioxarray=0.0.26=py_0 - rtree=0.9.4=py37h8526d28_1 - ruamel.yaml=0.16.6=py37h8f50634_1 - ruamel.yaml.clib=0.2.0=py37h8f50634_1 - scikit-image=0.16.2=py37hb3f55d8_0 - scipy=1.4.1=py37ha3d9a3c_3 - send2trash=1.5.0=py_0 - setuptools=46.1.3=py37hc8dfbb8_0 - shapely=1.7.0=py37hc88ce51_3 - siphon=0.8.0=py37_1002 - six=1.14.0=py_1 - smmap=3.0.4=pyh9f0ad1d_0 - snuggs=1.4.7=py_0 - sortedcontainers=2.1.0=py_0 - soupsieve=1.9.4=py37hc8dfbb8_1 - sqlalchemy=1.3.16=py37h8f50634_0 - sqlite=3.30.1=hcee41ef_0 - tbb=2018.0.5=h2d50403_0 - tblib=1.6.0=py_0 - terminado=0.8.3=py37hc8dfbb8_1 - testpath=0.4.4=py_0 - threddsclient=0.4.2=py_0 - tiledb=1.7.7=h8efa9f0_1 - tk=8.6.10=hed695b0_0 - toolz=0.10.0=py_0 - tornado=6.0.4=py37h8f50634_1 - tqdm=4.46.0=pyh9f0ad1d_0 - traitlets=4.3.3=py37hc8dfbb8_1 - traittypes=0.2.1=py_1 - typing_extensions=3.7.4.2=py_0 - tzcode=2020a=h516909a_0 - udunits2=2.2.27.6=h4e0c4b3_1001 - urllib3=1.25.9=py_0 - vcs=8.2=py_2 - voila=0.1.21=py_0 - vtk-cdat=8.2.0.8.2=py37_mesalibhead77ed_0 - wcwidth=0.1.9=pyh9f0ad1d_0 - webencodings=0.5.1=py_1 - webob=1.8.6=py_0 - wget=1.20.1=h22169c7_0 - wheel=0.34.2=py_1 - widgetsnbextension=3.5.1=py37_0 - x264=1!152.20180806=h14c3975_0 - xarray=0.15.1=py_0 - xerces-c=3.2.2=h8412b87_1004 - xorg-kbproto=1.0.7=h14c3975_1002 - xorg-libice=1.0.10=h516909a_0 - xorg-libsm=1.2.3=h84519dc_1000 - xorg-libx11=1.6.9=h516909a_0 - xorg-libxau=1.0.9=h14c3975_0 - xorg-libxdmcp=1.1.3=h516909a_0 - xorg-libxext=1.3.4=h516909a_0 - xorg-libxrender=0.9.10=h516909a_1002 - xorg-renderproto=0.11.1=h14c3975_1002 - xorg-xextproto=7.3.0=h14c3975_1002 - xorg-xproto=7.0.31=h14c3975_1007 - xz=5.2.5=h516909a_0 - yaml=0.2.4=h516909a_0 - zeromq=4.3.2=he1b5a44_2 - zict=2.0.0=py_0 - zipp=3.1.0=py_0 - zlib=1.2.11=h516909a_1006 - zstd=1.4.4=h6597ccf_3 - pip: - astunparse==1.6.3 - birdhouse-birdy==0.6.9 - boltons==20.1.0 - bottleneck==1.3.2 - cdms2==3.1.4 - colour==0.1.5 - funcsigs==1.0.2 - geojson==2.5.0 - ipython-blocking==0.2.1 - joblib==0.14.1 - mpld3==0.3 - pint==0.11 - pixiedust==1.1.18 - pyqt5-sip==4.19.18 - pyqtchart==5.12 - pyqtwebengine==5.12.1 - regrid2==3.1.4 - requests-magpie==0.1.1 - scikit-learn==0.22.2.post1 - wrapt==1.12.1 - xclim==0.16.0 prefix: /opt/conda/envs/birdy ```
tlvu
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May 7, 2020
Raven PR Ouranosinc/raven#266 (commit Ouranosinc/raven@0763bf5) removed salem dependency and replaced with rioxarray. Also add packages for the [`custom_climate_portraits`](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/tree/custom_climate_portraits) branch (PR Ouranosinc/PAVICS-e2e-workflow-tests#35). Noticeable changes: ```diff # conda release of bokeh seems to trail behind pypi > - bokeh=2.0.1=py37hc8dfbb8_0 < - bokeh==2.0.2 > - jupyter_bokeh=2.0.1=py_0 # should already exist, not sure why conda env export report this as new > - dask=2.15.0=py_0 # unpinned since salem is removed < - pandas=0.25.3=py37hb3f55d8_0 > - pandas=1.0.3=py37h0da4684_1 < - salem==0.2.4 > - rioxarray=0.0.26=py_0 # packages for custom_climate_portraits branch > - geoviews=1.8.1=py_0 > - h5netcdf=0.8.0=py_0 > - holoviews=1.13.2=pyh9f0ad1d_0 > - panel=0.9.5=py_1 > - hvplot=0.5.2=py_0 > - pscript=0.7.3=py_0 > - siphon=0.8.0=py37_1002 > - ipython-blocking==0.2.1 ``` See PR Ouranosinc/PAVICS-e2e-workflow-tests#44 (commit Ouranosinc/PAVICS-e2e-workflow-tests@bb81982) for more info.
tlvu
added a commit
to bird-house/birdhouse-deploy
that referenced
this pull request
May 7, 2020
jupyter: update to pavics/workflow-tests:200507 Raven PR Ouranosinc/raven#266 (commit Ouranosinc/raven@0763bf5) removed salem dependency and replaced with rioxarray. Also add packages for the [`custom_climate_portraits`](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/tree/custom_climate_portraits) branch (PR Ouranosinc/PAVICS-e2e-workflow-tests#35). Noticeable changes: ```diff # conda release of bokeh seems to trail behind pypi > - bokeh=2.0.1=py37hc8dfbb8_0 < - bokeh==2.0.2 > - jupyter_bokeh=2.0.1=py_0 # should already exist, not sure why conda env export report this as new > - dask=2.15.0=py_0 # unpinned since salem is removed < - pandas=0.25.3=py37hb3f55d8_0 > - pandas=1.0.3=py37h0da4684_1 < - salem==0.2.4 > - rioxarray=0.0.26=py_0 # packages for custom_climate_portraits branch > - geoviews=1.8.1=py_0 > - h5netcdf=0.8.0=py_0 > - holoviews=1.13.2=pyh9f0ad1d_0 > - panel=0.9.5=py_1 > - hvplot=0.5.2=py_0 > - pscript=0.7.3=py_0 > - siphon=0.8.0=py37_1002 > - ipython-blocking==0.2.1 ``` See PR Ouranosinc/PAVICS-e2e-workflow-tests#44 (commit Ouranosinc/PAVICS-e2e-workflow-tests@bb81982) for more info.
Zeitsperre
added a commit
that referenced
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Aug 17, 2023
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Overview
This PR fixes #262
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