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Beta #90

Merged
merged 334 commits into from
Sep 20, 2019
Merged

Beta #90

merged 334 commits into from
Sep 20, 2019

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CsabaHalmagyi
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sprintell and others added 30 commits July 25, 2019 11:36
@sprintell
Create Search Filter for the Persisted Mapping Entities
36b8fd8
@sprintell
Write treatments to H2 DB
7f86ff8
@sprintell
Create mapping rest endpoint with search filters
1875fe3 
Added pagination services and pageable feature to H2 mapping services
@sprintell
Properly handle any case combination in mapping entity filter search
e896392
@sprintell
Save unmapped treatments into database during dataloading
ff90640
@sprintell
Save unmapped treatments into database during dataloading
ad8cbaa
@sprintell
Reconfigure travisci dependency from oraclejdk8 to openjdk8 - oracle …
bd403d9 
…licensing has changed
@sprintell
Validate page and size request to avoid negative page request error
f884b8c
@sprintell
Added filter to query for missing mappings
a57d245 
Added filter to query for mapType
@CsabaHalmagyi
UPDOG separate metadata loading
b86affd
@sprintell
Get MappingedEntities By type from DB and Load mapping suggestions fr…
c8f4ca0 
…om Knowledge Base for unmapped terms
@sprintell
Get MappingedEntities By type from DB and Load mapping suggestions fr…
c4d2cdf 
…om Knowledge Base for unmapped terms
@sprintell
Angular Front end retrieves unmapped treatments and diagnosis and dis…
b2c1d6d 
…play on corresponding css badge
@sprintell
Add filter to mappings endpoint for retrieving all mapped terms
096bf07
@sprintell
ANgular UI, cleanup
f99843e
@sprintell
Compute mapping summary statistics on the server for the angular client
2dc7c73
@sprintell
Refactor mapping summary page to use summary statistics data from the…
c9d549f 
… server
@sprintell
Create entitytype filter (treatment, diagnosis, ...) for mapping summ…
803fe13 
…ary by data source
@CsabaHalmagyi
Update loader to use new template format
593be5e
@sprintell
Implement dynamic datasource-summary angular component and template f…
6ebd445 
…or treatment, diagnosis and ...
@sprintell
Show datasource specific table only if missing mapping entity exists
9053d3d
@sprintell
Dynamically retrieve center specific columns and row contents
a0d806b
@sprintell
Extend the Data Transfer Object Interface in angular to capture pagin…
06e7bc3 
…ation info
@sprintell
Add pagination feature in angular front end
874e6f8
@sprintell
Complete Pagination Navigation and make it respond to param changes o…
cae5671 
…n thesame route path
@sprintell
Fix misplaced text
74aae1e
@sprintell
Fix mapping suggestions
dd18311
@sprintell
Extend back end service to get MappingEntity By Id
6aca0e7
@sprintell
Implement dynamic column for suggestion table
7c37190
@sprintell
Create detailed notification view on curator selection of unmapped term
ac903f8
CsabaHalmagyi and others added 29 commits September 17, 2019 09:48
@CsabaHalmagyi
Load therapeutic procedures instead of radiotherapies
cd1ed23
@CsabaHalmagyi
Fix url
1ab8ad8
@CsabaHalmagyi
Load clinical studies branch
03d7549
@CsabaHalmagyi
Use datasource name for ds filter
3d419a2
@CsabaHalmagyi
Add attribute check to datasourceName
b222a23
@CsabaHalmagyi
Add nullcheck
37e1bfb
@CsabaHalmagyi
Add nullcheck to ds name
ece19cb
@CsabaHalmagyi
Disable IRCC-GC mutation visibility
751874c
@CsabaHalmagyi
Add log info
6d93463
@CsabaHalmagyi
Add fold change to datamodel
03c759d
@CsabaHalmagyi
Create a link to patient tab from search
92e5ca6
@CsabaHalmagyi
Fix treatment number query bug
759c53f
@CsabaHalmagyi
MappingService to be able to export treatment rules
cca0b51
@Afollet
Fixes Civic blank "Amino Acid Change" bug
1079c17 
Removes alert("JESUS IS LORD")
@rmwthorne
Format export mappings for EuroPDX
2d8eb38
@rmwthorne
Merge pull request #85 from PDXFinder/MappingExport
eef0e39 
Format export mappings for EuroPDX
@CsabaHalmagyi
Patient treatment can lead to multiple models
1e14f88
@CsabaHalmagyi
Merge branch 'dev' of https://github.com/PDXFinder/pdxfinder into dev
fe9e159
@rmwthorne
Fetch the harmonised treatment name for patient page
71e3b43
@CsabaHalmagyi
Merge pull request #86 from PDXFinder/HarmonisedTreatmentForPatient
1ddac19 
Fetch the harmonised treatment name for patient page
@CsabaHalmagyi
Fix cypher
217a8e6
@CsabaHalmagyi
Fix cypher as intended this time
a234211
@CsabaHalmagyi
Add msg
7d935c1
@CsabaHalmagyi
Merge pull request #87 from PDXFinder/dev
20b0465 
Dev
@rmwthorne
Fix format call
01d1717
@rmwthorne
Merge pull request #88 from PDXFinder/Hotfix
91cdd8f 
Fix format call
@CsabaHalmagyi
QA to be empty if missing
b43bb18
@CsabaHalmagyi
Merge branch 'dev' of https://github.com/PDXFinder/pdxfinder into dev
f8f0e59
@CsabaHalmagyi
Merge pull request #89 from PDXFinder/dev
f610694 
Dev
@CsabaHalmagyi CsabaHalmagyi merged commit a9e56dd into master Sep 20, 2019
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5 participants
@CsabaHalmagyi @rmwthorne @sprintell @Afollet @jmason-ebi