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Python API for linter #35

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yannikschaelte opened this issue Feb 16, 2021 · 2 comments
Open

Python API for linter #35

yannikschaelte opened this issue Feb 16, 2021 · 2 comments
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enhancement New feature or request

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@yannikschaelte
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A 1-line python API to the linter would be nice, basically calling petablint::main with arguments.
@dweindl
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dweindl commented Feb 16, 2021

So you don't want to provide your own PetabProblem? Otherwise petab.lint.lint_problem would do the job.

@yannikschaelte
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yannikschaelte commented Feb 16, 2021 •
edited

Yes, don't want to create the problem manually, i.e. instead of
petab.lint.lint_problem(petab.PetabProblem.from_yaml('yaml_file.yaml'))
petab.lint.lint_yaml('yaml_file.yaml')
or sth like that. If I see correctly, the CLI additionally also validates the YAML first.
Super low prio though ;)

@dweindl dweindl transferred this issue from PEtab-dev/PEtab Mar 18, 2021
@plakrisenko plakrisenko added the enhancement New feature or request label May 4, 2021
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@plakrisenko @dweindl @yannikschaelte