Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Capture Sex from VCF? #14

Closed
smlmbrt opened this issue Feb 8, 2022 · 1 comment
Closed

Capture Sex from VCF? #14

smlmbrt opened this issue Feb 8, 2022 · 1 comment
Labels
bug Something isn't working

Comments

@smlmbrt
Copy link
Member

smlmbrt commented Feb 8, 2022

Sex information doesn't seem to extracted from example bfiles or VCF.
@smlmbrt smlmbrt added the bug Something isn't working label Feb 8, 2022
@smlmbrt
Copy link
Member Author

smlmbrt commented May 24, 2022

This should be less of a problem now that we don't change everything into plink2 files (e.g. make our own pvars). Perhaps we need a way to specify the sex and/or phenotype of samples that are provided as VCF?

@smlmbrt smlmbrt changed the title Capture Sex from input genotyping files Capture Sex from VCF? Aug 12, 2022
@smlmbrt smlmbrt mentioned this issue Sep 1, 2022
Open
1 task
@smlmbrt smlmbrt closed this as completed Sep 1, 2022
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
bug Something isn't working
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@smlmbrt