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fix pdbdev sequnce endpoint #4

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merged 1 commit into from
Feb 29, 2024
Merged

fix pdbdev sequnce endpoint #4

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4 changes: 2 additions & 2 deletions app/routes/pdbdev.py
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Original file line number Diff line number Diff line change
Expand Up @@ -57,13 +57,13 @@ async def sequences(project_id):
conn = await get_db_connection()
cur = conn.cursor(cursor_factory=RealDictCursor)

sql = text("""SELECT dbseq.id, u.identification_file_name, dbseq.sequencel, dbseq.accession
sql = """SELECT dbseq.id, u.identification_file_name, dbseq.sequence, dbseq.accession
FROM upload AS u
JOIN dbsequence AS dbseq ON u.id = dbseq.upload_id
INNER JOIN peptideevidence pe ON dbseq.id = pe.dbsequence_ref AND dbseq.upload_id = pe.upload_id
WHERE u.id = ANY (%s)
AND pe.is_decoy = false
GROUP by dbseq.id, dbseq.sequence, u.identification_file_name;""")
GROUP by dbseq.id, dbseq.sequence, dbseq.accession, u.identification_file_name;"""

print(sql)
cur.execute(sql, [most_recent_upload_ids])
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