Falcon: a set of tools for fast aligning long reads for consensus and assembly
The Falcon tool kit is a set of simple code collection which I use for studying efficient assembly algorithm for haploid and diploid genomes. It has some back-end code implemented in C for speed and some simple front-end written in Python for convenience.
The default branch is now "master" which contained the latest code.
The current latest intergrated release is v0.3.0. Check v0.3+ Integration Installation Guide for installation.
For the pre-Jun 2015 v0.2.2 version, please check v0.2.2 release github repository. We will no longer address issues that are specific to that branch unless they also impact the current master branch.
- wiki pages
- Developer Installation Guide
- v0.3+ Integration Installation Guide
- Documentation is here.
- v0.2.2 release github repository
ABOUT THE LICENSE
Standard PacBio "Open Source License".
July 9th, 2015