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@Papatheodorou-Group

Papatheodorou Group

Decoding phenotypes using single cell genomics

Popular repositories

  1. BENGAL BENGAL Public

    Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets

    Python 28 8

  2. CATD_snakemake CATD_snakemake Public

    Snakemake pipeline for benchmarking cell-type deconvolution methods as well as deconvoluting real bulk RNA-seq data with the use of scRNA-seq datasets

    R 14 2

  3. scOntoMatch scOntoMatch Public

    scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies

    HTML 6

  4. scGOclust scGOclust Public

    Gene ontology terms to compare single cell RNA-seq data

    R 6

  5. BENGAL_reproducibility BENGAL_reproducibility Public

    BENchmark inteGrAtion strategies for cross-species anaLysis of single cell RNA sequencing data

    Jupyter Notebook 2 1

  6. scGOclust_reproducibility scGOclust_reproducibility Public

    Notebooks and files from the scGOclust study

    Jupyter Notebook

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