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Add --skipsoftcliprealignment option #513

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d-cameron opened this issue Aug 3, 2021 · 0 comments

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d-cameron commented Aug 3, 2021

SoftClipsToSplitReads not required for bwa-aligned input files.
- has minimal impact on results.
bwa is expensive in some environments/for some samples (e.g. FFPE)

d-cameron closed this as completed

d-cameron pushed a commit that referenced this issue


          #513 Added --skipsoftcliprealignment option

505f693

d-cameron pushed a commit that referenced this issue


          #513 removing aa tag instead of SA tag

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