2.7.2

• Centre-aligning nominal call positions #266
• Improved repeat-kmer assembly performance from O(n^2) to O(n log(n))
• Fixed hang during assembly error recovery
• Fixed issue with high samtools memory usage during sorting steps
• Updated somatic filtering script
  • Added gridss.min_direct_read_support somatic filtering parameter (default: 1 read)
  • Changed minimum reported event size to 8bp to match GRIDSS default minimum
  • Renamed somatic tumour variant allele fraction field from BPI_AF to TAF
  • Renamed the names of some somatic filters to improve consistency
  • Fixed bug with simple somatic inversion detection breakpoint pairing logic (was not using correct QUAL score)
  • Added optional output plots to somatic filtering script