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PathwayMatcher

PathwayMatcher is a standalone command line tool to match human biomedical data to pathways. Its advanced mapping functions allow matching multiple types of omics data to the Reactome database: lists of genetic variants, gene or protein identifiers, and lists of peptides including posttranslational modifications.

Please note that PathwayMatcher maps the experimental data to pathways in an exhaustive and unbiased fashion, without advanced filtering, statistics, or biological inference. We recommend that users interpret the results of the matching using the systems biology method that best suits their experiment and biomedical context.