Repository for data and code related to analyses of population structure of the black stain root disease fungus Leptographium wageneri
Aligning raw reads to reference genome, calling SNPs, assigning genotypes, quality filtering
Testing for the presence and structure of genes at mating type loci, assigning mating types to each sample, calculating mating type ratios
Phylogenetic reconstruction of L. wageneri vars. pseudotsugae and wageneri
Analyses of population structure and differentiation