Skip to content

An R package to query the NCBO Bioportal ATC code API

License

Unknown, MIT licenses found

Licenses found

Unknown
LICENSE
MIT
LICENSE.md
Notifications You must be signed in to change notification settings

PatrickRWright/ATCapiR

Repository files navigation

ATCapiR AppVeyor Build Status travis codecov

Before you install

If you would like to work with this package you will first need to create a personal account at the NCBI Bioportal. Withing your account information you should be able to find an API key. Only a valid API key will allow you to use the package.

Installing from GitHub with devtools

devtools::install_github("PatrickRWright/ATCapiR")

Basic usage

# load the package
library(ATCapiR)
# vector of ATC codes
ATC_vect <- c("A02BC02", "C03BA08", "A02BC02", "A02BC02", "A07DA03", "A07DA03",
              "A02BC02", "A02BC02", "A02BC02", "A02BC02", "C10AA05", "C10AA05",
              "C10AA05", "N05BA06", "N05BA06", "N05BA06", "N06AX11", "N06AX11")
# you will need to create an account at https://bioportal.bioontology.org/ to receive an api_key
# the key below is not real and just supposed to give you an impression of the format
api_key <- "a123b456-cd78-91e2-fgh3-4ij56kl7mno8"
# return translation at third level resolution
ATC_translated_df <- translate_ATC_codes(ATC_vect, level_depth = 3, api_key = api_key)

If HTTP error 401 is returned your API key is likely wrong or void.

About

An R package to query the NCBO Bioportal ATC code API

Resources

License

Unknown, MIT licenses found

Licenses found

Unknown
LICENSE
MIT
LICENSE.md

Stars

Watchers

Forks

Releases

No releases published

Packages

 
 
 

Languages