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Issues list

Counts by technology type do not sum up to the total number of datasets high priority Issues that require immediate attention needs confirmation Issues that need to be confirmed or reliably reproduced
#1188 opened Jul 15, 2024 by arteymix 1.31.10
Genes cannot be search by any GO term regression Indicate that something that used to work is presently broken
#1187 opened Jul 14, 2024 by arteymix
2 tasks
1.31.10
1
GemmaAndExperimentalFactorOntologyTest is timing out on the CI low priority regression Indicate that something that used to work is presently broken
#1186 opened Jul 13, 2024 by arteymix
Factor values can be duplicated when populating a continuous factor bug needs confirmation Issues that need to be confirmed or reliably reproduced
#1185 opened Jul 13, 2024 by arteymix 1.31.10
1
Increase rendering resolution of diagnostic plots enhancement Enhance the code or user experience gui Issues or pull requests involving the Web UI
#1184 opened Jul 13, 2024 by arteymix
UI components for single-cell single cell Issues related to single-cell data suppor
#1183 opened Jul 11, 2024 by arteymix
/expressionExperiment/showExpressionExperimentSubSet.html needs some attention enhancement Enhance the code or user experience single cell Issues related to single-cell data suppor
#1182 opened Jul 11, 2024 by arteymix
Fix colour scale for continuous factors in heatmap visualisation bug gui Issues or pull requests involving the Web UI
#1180 opened Jul 5, 2024 by ppavlidis
@ppavlidis
/datasets/analyses/differential/results/genes/{gene} fails on staging bug high priority Issues that require immediate attention rest-api Issues or pull requests involving the RESTful API
#1179 opened Jul 5, 2024 by oganm 1.31.10
@arteymix
2
Missing retainedTermUris parameter in query bug rest-api Issues or pull requests involving the RESTful API
#1178 opened Jul 5, 2024 by arteymix 1.31.10
@arteymix
IllegalArgumentException: Cannot pass vectors from more than one quantitation type: QuantitationType Id=532865 Name=VALUE - Processed version General Type=QUANTITATIVE Type=AMOUNT Scale=LOG2 Representation=DOUBLE [Normalized] [Preferred] vs QuantitationType Id=532864 Name=VALUE - Processed version General Type=QUANTITATIVE Type=AMOUNT Scale=LOG2 Representation=DOUBLE [Normalized] [Preferred] bug rest-api Issues or pull requests involving the RESTful API
#1177 opened Jul 4, 2024 by arteymix 1.31.9
@arteymix
1
Use subsets as collection of cell populations bioassays single cell Issues related to single-cell data suppor
#1175 opened Jul 4, 2024 by arteymix
@arteymix
Remove usages of SimpleFormController enhancement Enhance the code or user experience gui Issues or pull requests involving the Web UI spring-4
#1172 opened Jun 30, 2024 by arteymix 1.32.0
1
An unhandled exception was intercepted: NullPointerException: bug
#1170 opened Jun 29, 2024 by arteymix 1.31.9
No adapter for handler [ubic.gemma.web.controller.coexpressionSearch.CoexpressionSearchController@10e181e8]: The DispatcherServlet configuration needs to include a HandlerAdapter that supports this handler bug
#1169 opened Jun 29, 2024 by arteymix 1.31.9
Cannot delete or update a parent row: a foreign k ey constraint fails (gemd.BIO_MATERIAL_FACTOR_VALUES, CONSTRAINT BIO_MATERIAL_FACTOR_VALUES_FKC FOREIGN KEY (FACTOR_VALUES_FK) REFERENCES FACTOR_VALUE (ID)) bug
#1167 opened Jun 27, 2024 by arteymix 1.31.9
Cannot delete or update a parent row: a foreign key constraint fails (gemd.EXPERIMENTS2EXPRESSION_EXPERIMENT_SETS, CONSTRAINT FKBC3597A89FCB738D FOREIGN KEY (EXPERIMENTS_FK) REFERENCES INVESTIGATION (ID)) bug
#1166 opened Jun 27, 2024 by arteymix 1.31.9
Curation interface request: duplicate factor values enhancement Enhance the code or user experience
#1160 opened Jun 21, 2024 by xnrxng
@ppavlidis
1
manually created ExpressionExperimentSets have "+" replacing spaces in the name and description bug
#1159 opened Jun 21, 2024 by ppavlidis
ProcessedExpressionDataCreateServiceTest.testComputeDevRankForExpressionExperimentB randomly fails bug low priority
#1158 opened Jun 21, 2024 by arteymix 1.31.9
Add a @MockBean annotation to automatically mock and reset beans in tests enhancement Enhance the code or user experience low priority
#1157 opened Jun 21, 2024 by arteymix
Gene search widget doesn't recognize non-symbol searches bug gui Issues or pull requests involving the Web UI
#1156 opened Jun 20, 2024 by ppavlidis
@arteymix
JSP/JSTL should always render with "en_CA" locale enhancement Enhance the code or user experience gui Issues or pull requests involving the Web UI
#1146 opened Jun 11, 2024 by arteymix
JSP errors do not produce stacktraces in the console
#1145 opened Jun 11, 2024 by arteymix
Foreign key error when running affyFromCel bug needs confirmation Issues that need to be confirmed or reliably reproduced
#1129 opened May 16, 2024 by arteymix
@arteymix
2
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