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Software stack installation with cpe 23.09 and spack 0.21.0 #258

Merged
merged 92 commits into from
Jun 7, 2024
Merged

Software stack installation with cpe 23.09 and spack 0.21.0 #258

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64babaf
initial commit for job script with reframe
Feb 27, 2024
91a9aec
Add Reframe testing to scripts
Feb 27, 2024
3b69095
Fix for libszip
Feb 27, 2024
283afee
Update settings for my local testing install
Feb 27, 2024
29e2d41
Software stack deployment on cpe/23.09 using spack/0.20.0
Feb 23, 2024
c719a12
Update slate version
ddeeptimahanti Feb 25, 2024
9af5aae
update to netcdf-c recipe required for cce/16.0.1
Feb 25, 2024
fdc84b4
to create kokkos modules with and without rocm
Feb 26, 2024
d58bf4f
renaming kokkos modules
ddeeptimahanti Feb 26, 2024
4541e79
Update hpx spec to use openblas instead of netlib-lapack
ddeeptimahanti Feb 27, 2024
d477eac
Add scripts for running Reframe tests
Mar 19, 2024
8226a4a
Script for installing Reframe separately
Mar 20, 2024
b94a500
Command to automatically comment out .llvm loads in module files
Mar 26, 2024
d0612f4
Move Reframe concretisation tests into separate script
Mar 26, 2024
09ac835
Exclude apps env from general Reframe module test script
Mar 26, 2024
d1120fa
Add reframe and module loads to reframe tests scripts
Mar 26, 2024
f236b3e
Add Reframe files to systems/setonix directory
Mar 26, 2024
51e1e51
Move reframe files to system directory
Mar 27, 2024
a26f9f2
Add module loads to reframe tests scripts
Mar 27, 2024
50cf278
Add Reframe files and version to system settings file
Mar 27, 2024
3836ce0
Add reframe testing scripts to main sw stack install script
Mar 27, 2024
05d9823
Clean up reframe python files
Mar 27, 2024
f4b3cc0
Delete rfm job script as it isn't needed
Mar 27, 2024
1c98acd
Testing spack/0.21.0 on cpe/23.09 node
Apr 8, 2024
10dda43
Testing spack/0.21.0 on cpe/23.09 node
Apr 8, 2024
8938716
Testing spack/0.21.0 on cpe/23.09 node
Apr 9, 2024
c767e87
Testing spack/0.21.0 on cpe/23.09 node
Apr 9, 2024
8cdf764
added missing packages
Apr 10, 2024
48a78dc
deleted unwanted recipes
Apr 10, 2024
e81a918
delete lapackpp
Apr 10, 2024
eccc6ba
updating cray envs
Apr 11, 2024
4cf2a7b
updated versions of packages and removed unwanted recipes
Apr 12, 2024
c356dfb
further tuning spack yaml
Apr 12, 2024
16b19a7
fixing typo
Apr 12, 2024
f01caf6
adding modified recipe for mgard
Apr 13, 2024
0956dbf
Fixing packages
Apr 19, 2024
8b872ef
Add boost to special cases due to 'visibility' parameter
Apr 19, 2024
9a00f50
added blaspp and removed redundancies
Apr 23, 2024
8f3d962
Adding magma and ansys-fluids recipes
Apr 26, 2024
d7b5b9a
Move commands for basic sanity check to separate yaml file
Apr 26, 2024
8bd59cb
Minor code cleanup
Apr 26, 2024
dd66990
cpe/23.09 deployment using spack/0.21.0
Apr 29, 2024
4ddf069
Fixing hard-coded paths
Apr 30, 2024
15a3037
fixing rocm dependent recipes
May 1, 2024
0d93707
Merge branch 'cpe_23.09_spack_0.21.0' into cmeyer-rfm
May 9, 2024
ac90649
New pkgs for 2024.05, remove any version references
May 9, 2024
6af5071
Fix typo and comments
May 9, 2024
3dcf6d0
wcslib, xerces-c specs fixed in 2024.05
May 9, 2024
5cc470e
Add commands for baseline sanity check for more packages
May 10, 2024
645f04d
Have zen2 path flexible to different gcc/cce versions
May 15, 2024
46084dd
Allow tests to run on repos other than the one tests are located in (…
May 15, 2024
9c2b9c5
Add new packages to pkg_cmds.yaml
May 15, 2024
5128eed
Adds script to install rust.
dipietrantonio May 17, 2024
ab13518
Fixes path.
dipietrantonio May 17, 2024
d898819
Merge pull request #259 from PawseySC/cdp-add-rust-buildscript
ddeeptimahanti May 17, 2024
c8052b8
Fixes module installation path.
dipietrantonio May 17, 2024
4724fa1
Merge pull request #260 from PawseySC/cdp-add-rust-buildscript
ddeeptimahanti May 17, 2024
60d7f57
Sets rust not buildable and comments it out of the environment.
dipietrantonio May 17, 2024
b666309
Add rfm installation tests to post-installation operations script
May 17, 2024
6199928
Handle running scripts on both compute and login nodes
May 20, 2024
7e24d4d
Move reframe file declaration to test running scripts
May 20, 2024
95437b9
Modify repo locations in rfm scripts
May 21, 2024
7f084d1
Remove .llvm load fix from install_environments script
May 21, 2024
ef03f81
Several updates to facilitate running automatically during installation
May 22, 2024
57ec809
added fit2idia for askap users
May 23, 2024
77227eb
fixing modulefile
May 23, 2024
6239116
Merge pull request #261 from PawseySC/cdp-add-rust-buildscript
ddeeptimahanti May 23, 2024
a9389a8
add mwa packages
d3v-null May 24, 2024
a5da298
Adding omnitrace recipe
May 27, 2024
153f07c
update modules.yaml file
May 28, 2024
02a2e16
Delete shpc_registry/quay.io/sarahbeecroft9/alphafold directory
SarahBeecroft May 30, 2024
47bf577
Merge pull request #267 from PawseySC/SarahBeecroft-delete-old-AF
ddeeptimahanti May 31, 2024
375feb8
Updating omnitrace.sh which works with rocm/5.2.3
May 31, 2024
b3d0fb1
Updating version of omniperf
May 31, 2024
90158bd
adding modules.yaml and omnitrace spack recipe
May 31, 2024
9c971af
Merge pull request #269 from PawseySC/omnitrace_and_omniperf
ddeeptimahanti May 31, 2024
127c92c
Adds amber gpu recipe.
dipietrantonio May 31, 2024
6b63846
Add fixes for llvm and ++ in modules before running tests
Jun 6, 2024
6028f2c
Merge branch 'cpe_23.09_spack_0.21.0' into cmeyer-rfm
Jun 6, 2024
d55046c
Clean up extraneous files and diffs between cpe_23.09_spack_0.21.0 br…
Jun 6, 2024
552a6c7
More file cleanup
Jun 6, 2024
76301e4
Boost package.py file newline test
Jun 6, 2024
defa448
feh package.py file newline test
Jun 6, 2024
4521c48
Fix newline/whitespace discrepancies
Jun 6, 2024
086aa3a
Update amber_gpu.sh
dipietrantonio Jun 6, 2024
e312c14
add python variant (thanks Cristian)
d3v-null Jun 6, 2024
3b6fdf3
set rust version range in giant-squid
d3v-null Jun 6, 2024
c9c0360
Merge pull request #270 from PawseySC/cdp-amber-gpu
ddeeptimahanti Jun 6, 2024
9877489
add hyperbeam python bindings
d3v-null Jun 6, 2024
e406991
Correct script name
Jun 6, 2024
9041411
Merge pull request #262 from PawseySC/cmeyer-rfm
ddeeptimahanti Jun 6, 2024
6aff148
Merge pull request #263 from d3v-null/cpe_23.09_spack_0.21.0
ddeeptimahanti Jun 6, 2024
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1 change: 1 addition & 0 deletions .gitignore
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Original file line number Diff line number Diff line change
Expand Up @@ -18,3 +18,4 @@ logs/
*.tar.gz
*.tar.bz2
patch*
slurm-*
2 changes: 1 addition & 1 deletion fixes/modulenames_plus_common.patch
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Expand Up @@ -17,7 +17,7 @@ index eaf79f6d04..1be017f46e 100644
@@ -614,8 +616,9 @@ def use_name(self):
projection = self.conf.default_projections["all"]

name = self.spec.format(projection)
name = self.spec.format_path(projection)
- # Not everybody is working on linux...
- parts = name.split("/")
+ # Not everybody is working on linux... so split on /
Expand Down
213 changes: 0 additions & 213 deletions repo/packages/adios2/2.5-fix-clear_cache.patch
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32 changes: 0 additions & 32 deletions repo/packages/adios2/2.6-fix-gcc10-symbols.patch
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