Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[ENH] move biascorrect so it runs on resampled data by default #527

Merged
merged 15 commits into from Mar 31, 2023

Conversation

mattcieslak
Copy link
Collaborator

As noted in #517 it is likely best to do b1 bias correction at the very end of preprocessing. This PR deprecates the --dwi-no-biascorr flag and adds a --b1-biascorr-stage, which can be 'final' (the new default, apply it at the end), 'legacy' (perform it on individual scans or distortion groups based on other flags) or 'none' (no bias correction)

@mattcieslak mattcieslak merged commit 5707897 into master Mar 31, 2023
1 check passed
@mattcieslak mattcieslak deleted the enh/late-biascorr branch March 31, 2023 15:42
@mattcieslak mattcieslak self-assigned this Apr 17, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

1 participant