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Peptone

World's first, end-to-end Protein Engineering Operating System (PeOS).

Popular repositories

  1. dspp-keras dspp-keras Public

    Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.

    Python 166 21

  2. ADOPT ADOPT Public

    ADOPT: intrinsic protein disorder prediction through deep bidirectional transformers

    Jupyter Notebook 15 1

  3. nerfax nerfax Public

    An efficient method for the conversion from internal to Cartesian coordinates that utilizes the platform-agnostic JAX Python library.

    Jupyter Notebook 12 3

  4. Machine-learning-for-proteins Machine-learning-for-proteins Public

    Forked from yangkky/Machine-learning-for-proteins

    Listing of papers about machine learning for proteins.

    8 3

  5. ProteoNeMo ProteoNeMo Public

    Ongoing research training transformer models on proteome at scale

    Python 5 1

  6. dspp-data dspp-data Public

    Database of Structural Propensities of Proteins (dSPP) raw data repository by Peptone Inc.

    4 2

Repositories

Showing 8 of 8 repositories
  • contrastive-finetuning-plms Public

    Optimizing protein language models with Sentence Transformers

    Python 2 Apache-2.0 1 0 0 Updated Jan 6, 2024
  • nerfax Public

    An efficient method for the conversion from internal to Cartesian coordinates that utilizes the platform-agnostic JAX Python library.

    Jupyter Notebook 12 Apache-2.0 3 0 0 Updated Sep 18, 2023
  • ADOPT Public

    ADOPT: intrinsic protein disorder prediction through deep bidirectional transformers

    Jupyter Notebook 15 MIT 1 12 0 Updated May 2, 2023
  • pepkalc Public

    Robust simulation software for the comprehensive evaluation of protein electrostatics in unfolded state.

    Python 4 1 0 0 Updated Aug 23, 2022
  • ProteoNeMo Public

    Ongoing research training transformer models on proteome at scale

    Python 5 Apache-2.0 1 3 0 Updated Aug 11, 2022
  • dspp-keras Public

    Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.

    Python 166 AGPL-3.0 21 1 0 Updated Jun 15, 2022
  • Machine-learning-for-proteins Public Forked from yangkky/Machine-learning-for-proteins

    Listing of papers about machine learning for proteins.

    8 GPL-3.0 192 0 0 Updated Mar 15, 2021
  • dspp-data Public

    Database of Structural Propensities of Proteins (dSPP) raw data repository by Peptone Inc.

    4 2 1 0 Updated Jun 4, 2017

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