Description of code

PersAM_train.py

Code to learn PersAM. We trained PersAM using 8 GPUs.
When used, it is necessary to implement a process to normalize clinical_record.

PersAM_test.py

Code to evaluate PersAM.

model.py

Code describing the PersAM model.

transformer_simple.py

Code describing the transformer used in PersAM.

Dataset.py

Code to create dataset (bags).

Required Data

./Data : Whole slide images (SVS)
./csv/[DLBCL,FL,Reactive].csv : files written coordinate of each patch
./[DLBCL,FL,Reactive].txt : files written slideID of each subtype
./clinical_record.csv : clinical record data